Hb_000345_510

Information

Type -
Description -
Location Contig345: 400428-404110
Sequence    

Annotation

kegg
ID rcu:RCOM_1431410
description Protein YIPF1, putative
nr
ID XP_012089070.1
description PREDICTED: protein YIPF1 homolog [Jatropha curcas]
swissprot
ID Q54TS4
description Protein YIPF1 homolog OS=Dictyostelium discoideum GN=yipf1 PE=3 SV=1
trembl
ID B9RF52
description Protein YIPF OS=Ricinus communis GN=RCOM_1431410 PE=3 SV=1
Gene Ontology
ID GO:0016021
description integral membrane yip1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36040: 400392-404052
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_510 0.0 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
2 Hb_002272_050 0.0791909298 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
3 Hb_003213_010 0.0941324867 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
4 Hb_006132_110 0.094608998 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000875_080 0.0970371891 - - PREDICTED: (+)-delta-cadinene synthase isozyme XC14-like isoform X2 [Gossypium raimondii]
6 Hb_000049_140 0.0973607237 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
7 Hb_002163_050 0.1010633871 - - hypothetical protein POPTR_0014s15490g [Populus trichocarpa]
8 Hb_012340_090 0.1012940469 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
9 Hb_073973_130 0.1042266481 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
10 Hb_006615_050 0.105214896 - - PREDICTED: uncharacterized protein LOC105640686 [Jatropha curcas]
11 Hb_000300_260 0.1069159674 - - PREDICTED: replication factor C subunit 3 [Jatropha curcas]
12 Hb_001025_090 0.1082102744 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
13 Hb_004312_010 0.1087169916 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X2 [Jatropha curcas]
14 Hb_000392_230 0.1100752818 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000649_230 0.110087071 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
16 Hb_000297_160 0.1109090578 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
17 Hb_000173_310 0.1116543048 - - PREDICTED: uncharacterized protein LOC105631893 isoform X1 [Jatropha curcas]
18 Hb_000331_060 0.1119781303 - - PREDICTED: 60S ribosomal protein L17-2-like isoform X2 [Jatropha curcas]
19 Hb_001723_150 0.113646637 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
20 Hb_004807_020 0.1140225226 - - PREDICTED: transcription initiation factor TFIID subunit 14b-like [Jatropha curcas]

Gene co-expression network

sample Hb_000345_510 Hb_000345_510 Hb_002272_050 Hb_002272_050 Hb_000345_510--Hb_002272_050 Hb_003213_010 Hb_003213_010 Hb_000345_510--Hb_003213_010 Hb_006132_110 Hb_006132_110 Hb_000345_510--Hb_006132_110 Hb_000875_080 Hb_000875_080 Hb_000345_510--Hb_000875_080 Hb_000049_140 Hb_000049_140 Hb_000345_510--Hb_000049_140 Hb_002163_050 Hb_002163_050 Hb_000345_510--Hb_002163_050 Hb_002272_050--Hb_000875_080 Hb_171900_090 Hb_171900_090 Hb_002272_050--Hb_171900_090 Hb_000336_210 Hb_000336_210 Hb_002272_050--Hb_000336_210 Hb_000359_040 Hb_000359_040 Hb_002272_050--Hb_000359_040 Hb_005271_040 Hb_005271_040 Hb_002272_050--Hb_005271_040 Hb_000297_160 Hb_000297_160 Hb_002272_050--Hb_000297_160 Hb_000173_310 Hb_000173_310 Hb_003213_010--Hb_000173_310 Hb_001723_150 Hb_001723_150 Hb_003213_010--Hb_001723_150 Hb_000300_260 Hb_000300_260 Hb_003213_010--Hb_000300_260 Hb_000649_230 Hb_000649_230 Hb_003213_010--Hb_000649_230 Hb_004312_010 Hb_004312_010 Hb_003213_010--Hb_004312_010 Hb_003213_010--Hb_002272_050 Hb_006132_110--Hb_004312_010 Hb_000086_700 Hb_000086_700 Hb_006132_110--Hb_000086_700 Hb_006132_110--Hb_003213_010 Hb_006132_110--Hb_000300_260 Hb_006132_110--Hb_000649_230 Hb_016467_010 Hb_016467_010 Hb_006132_110--Hb_016467_010 Hb_000875_080--Hb_000336_210 Hb_000875_080--Hb_000049_140 Hb_000875_080--Hb_000297_160 Hb_000875_080--Hb_005271_040 Hb_000875_080--Hb_171900_090 Hb_005144_090 Hb_005144_090 Hb_000049_140--Hb_005144_090 Hb_000049_140--Hb_000336_210 Hb_004453_130 Hb_004453_130 Hb_000049_140--Hb_004453_130 Hb_011618_050 Hb_011618_050 Hb_000049_140--Hb_011618_050 Hb_000049_140--Hb_000297_160 Hb_000260_630 Hb_000260_630 Hb_002163_050--Hb_000260_630 Hb_001863_380 Hb_001863_380 Hb_002163_050--Hb_001863_380 Hb_002163_050--Hb_000049_140 Hb_002163_050--Hb_005144_090 Hb_002600_020 Hb_002600_020 Hb_002163_050--Hb_002600_020 Hb_000270_310 Hb_000270_310 Hb_002163_050--Hb_000270_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1479 11.5099 31.486 16.1295 17.9854 9.69492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.5529 18.9342 7.8434 13.9622 6.06658

CAGE analysis