Hb_000345_530

Information

Type -
Description -
Location Contig345: 420001-427468
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02450g
description POPTRDRAFT_570851; hypothetical protein
nr
ID XP_012089071.1
description PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JU54
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23358 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36042: 423499-427360 , PASA_asmbl_36043: 425261-425461 , PASA_asmbl_36045: 420030-453997 , PASA_asmbl_36046: 420745-453997
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_530 0.0 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
2 Hb_000923_040 0.0702726498 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
3 Hb_000104_080 0.0718688504 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
4 Hb_001040_040 0.0780201445 - - Uncharacterized protein TCM_029905 [Theobroma cacao]
5 Hb_030827_030 0.0787227979 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
6 Hb_002249_160 0.085627386 - - -
7 Hb_000976_080 0.0903480749 - - hypothetical protein VITISV_034376 [Vitis vinifera]
8 Hb_001584_290 0.0907467027 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
9 Hb_152453_010 0.0908315693 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
10 Hb_003006_060 0.0912026516 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
11 Hb_002675_040 0.0968198926 - - ran-binding protein, putative [Ricinus communis]
12 Hb_005803_010 0.0985704651 - - PREDICTED: probable zinc metallopeptidase EGY3, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_023001_020 0.0996012783 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]
14 Hb_011915_010 0.1004125788 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
15 Hb_033594_020 0.100555422 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
16 Hb_000640_220 0.1012890644 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-4 [Jatropha curcas]
17 Hb_000453_190 0.101548538 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
18 Hb_008143_030 0.1022015474 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
19 Hb_003656_160 0.102663917 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
20 Hb_008725_130 0.1031574899 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]

Gene co-expression network

sample Hb_000345_530 Hb_000345_530 Hb_000923_040 Hb_000923_040 Hb_000345_530--Hb_000923_040 Hb_000104_080 Hb_000104_080 Hb_000345_530--Hb_000104_080 Hb_001040_040 Hb_001040_040 Hb_000345_530--Hb_001040_040 Hb_030827_030 Hb_030827_030 Hb_000345_530--Hb_030827_030 Hb_002249_160 Hb_002249_160 Hb_000345_530--Hb_002249_160 Hb_000976_080 Hb_000976_080 Hb_000345_530--Hb_000976_080 Hb_000923_040--Hb_000104_080 Hb_008887_050 Hb_008887_050 Hb_000923_040--Hb_008887_050 Hb_001584_290 Hb_001584_290 Hb_000923_040--Hb_001584_290 Hb_023001_020 Hb_023001_020 Hb_000923_040--Hb_023001_020 Hb_000923_040--Hb_001040_040 Hb_028707_090 Hb_028707_090 Hb_000104_080--Hb_028707_090 Hb_000104_080--Hb_001584_290 Hb_000236_280 Hb_000236_280 Hb_000104_080--Hb_000236_280 Hb_008143_030 Hb_008143_030 Hb_000104_080--Hb_008143_030 Hb_000104_080--Hb_023001_020 Hb_000395_020 Hb_000395_020 Hb_001040_040--Hb_000395_020 Hb_011915_010 Hb_011915_010 Hb_001040_040--Hb_011915_010 Hb_000868_060 Hb_000868_060 Hb_001040_040--Hb_000868_060 Hb_009252_100 Hb_009252_100 Hb_001040_040--Hb_009252_100 Hb_001040_040--Hb_030827_030 Hb_003126_100 Hb_003126_100 Hb_030827_030--Hb_003126_100 Hb_030827_030--Hb_000923_040 Hb_030827_030--Hb_000104_080 Hb_002587_020 Hb_002587_020 Hb_030827_030--Hb_002587_020 Hb_002249_160--Hb_011915_010 Hb_002249_160--Hb_030827_030 Hb_001050_010 Hb_001050_010 Hb_002249_160--Hb_001050_010 Hb_005408_020 Hb_005408_020 Hb_002249_160--Hb_005408_020 Hb_002249_160--Hb_003126_100 Hb_152453_010 Hb_152453_010 Hb_000976_080--Hb_152453_010 Hb_005846_020 Hb_005846_020 Hb_000976_080--Hb_005846_020 Hb_001001_020 Hb_001001_020 Hb_000976_080--Hb_001001_020 Hb_005695_060 Hb_005695_060 Hb_000976_080--Hb_005695_060 Hb_002783_120 Hb_002783_120 Hb_000976_080--Hb_002783_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.8657 11.3339 19.3455 9.72622 46.0731 33.4434
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.5491 8.09065 14.1905 10.3421 6.5768

CAGE analysis