Hb_000346_040

Information

Type -
Description -
Location Contig346: 30959-32342
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID W5G5X1
description Uncharacterized protein OS=Triticum aestivum PE=4 SV=1
Gene Ontology
ID GO:0005622
description transcription factor bhlh121

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36096: 30950-51462
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000346_040 0.0 - - -
2 Hb_001006_020 0.088730342 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
3 Hb_001235_030 0.09329215 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
4 Hb_006420_100 0.0985252095 - - PREDICTED: protein bicaudal C homolog 1 [Jatropha curcas]
5 Hb_000072_180 0.101616206 - - PREDICTED: EVI5-like protein [Jatropha curcas]
6 Hb_001234_100 0.1040674789 - - PREDICTED: eyes absent homolog 2 isoform X1 [Jatropha curcas]
7 Hb_001390_130 0.1102832142 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
8 Hb_002284_230 0.1130709381 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
9 Hb_003697_050 0.1140860152 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
10 Hb_000046_350 0.1161370492 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006429_010 0.1181370245 - - PREDICTED: uncharacterized protein LOC105639724 [Jatropha curcas]
12 Hb_064441_010 0.1183522096 - - PREDICTED: MACPF domain-containing protein CAD1-like isoform X1 [Jatropha curcas]
13 Hb_005092_060 0.118823697 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
14 Hb_001014_230 0.1216822874 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g11460 [Jatropha curcas]
15 Hb_002016_120 0.1220546871 - - PREDICTED: uncharacterized protein OsI_027940 [Jatropha curcas]
16 Hb_000421_220 0.1233357096 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
17 Hb_025240_040 0.1254037957 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
18 Hb_002111_040 0.1260894256 - - hypothetical protein JCGZ_16989 [Jatropha curcas]
19 Hb_002183_060 0.126805788 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
20 Hb_007416_060 0.1279300761 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]

Gene co-expression network

sample Hb_000346_040 Hb_000346_040 Hb_001006_020 Hb_001006_020 Hb_000346_040--Hb_001006_020 Hb_001235_030 Hb_001235_030 Hb_000346_040--Hb_001235_030 Hb_006420_100 Hb_006420_100 Hb_000346_040--Hb_006420_100 Hb_000072_180 Hb_000072_180 Hb_000346_040--Hb_000072_180 Hb_001234_100 Hb_001234_100 Hb_000346_040--Hb_001234_100 Hb_001390_130 Hb_001390_130 Hb_000346_040--Hb_001390_130 Hb_000289_110 Hb_000289_110 Hb_001006_020--Hb_000289_110 Hb_005144_050 Hb_005144_050 Hb_001006_020--Hb_005144_050 Hb_000159_130 Hb_000159_130 Hb_001006_020--Hb_000159_130 Hb_001366_180 Hb_001366_180 Hb_001006_020--Hb_001366_180 Hb_002183_060 Hb_002183_060 Hb_001006_020--Hb_002183_060 Hb_000421_220 Hb_000421_220 Hb_001006_020--Hb_000421_220 Hb_005092_060 Hb_005092_060 Hb_001235_030--Hb_005092_060 Hb_001014_230 Hb_001014_230 Hb_001235_030--Hb_001014_230 Hb_114336_020 Hb_114336_020 Hb_001235_030--Hb_114336_020 Hb_008554_070 Hb_008554_070 Hb_001235_030--Hb_008554_070 Hb_011534_030 Hb_011534_030 Hb_001235_030--Hb_011534_030 Hb_002016_120 Hb_002016_120 Hb_001235_030--Hb_002016_120 Hb_006420_100--Hb_000072_180 Hb_002111_040 Hb_002111_040 Hb_006420_100--Hb_002111_040 Hb_000046_350 Hb_000046_350 Hb_006420_100--Hb_000046_350 Hb_006420_100--Hb_002183_060 Hb_001545_170 Hb_001545_170 Hb_006420_100--Hb_001545_170 Hb_000023_090 Hb_000023_090 Hb_006420_100--Hb_000023_090 Hb_000072_180--Hb_000046_350 Hb_004672_010 Hb_004672_010 Hb_000072_180--Hb_004672_010 Hb_028515_010 Hb_028515_010 Hb_000072_180--Hb_028515_010 Hb_027625_010 Hb_027625_010 Hb_000072_180--Hb_027625_010 Hb_148113_010 Hb_148113_010 Hb_000072_180--Hb_148113_010 Hb_001234_100--Hb_000421_220 Hb_025240_040 Hb_025240_040 Hb_001234_100--Hb_025240_040 Hb_003502_090 Hb_003502_090 Hb_001234_100--Hb_003502_090 Hb_003697_040 Hb_003697_040 Hb_001234_100--Hb_003697_040 Hb_001205_150 Hb_001205_150 Hb_001234_100--Hb_001205_150 Hb_000479_190 Hb_000479_190 Hb_001234_100--Hb_000479_190 Hb_000291_080 Hb_000291_080 Hb_001390_130--Hb_000291_080 Hb_001390_130--Hb_002111_040 Hb_001390_130--Hb_003697_040 Hb_005488_200 Hb_005488_200 Hb_001390_130--Hb_005488_200 Hb_007416_060 Hb_007416_060 Hb_001390_130--Hb_007416_060 Hb_000538_070 Hb_000538_070 Hb_001390_130--Hb_000538_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.85172 2.35455 2.36252 9.15169 4.932 12.5022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.83334 13.1427 12.9084 8.8378 10.7654

CAGE analysis