Hb_000347_040

Information

Type -
Description -
Location Contig347: 58426-70332
Sequence    

Annotation

kegg
ID tcc:TCM_029207
description Uncharacterized protein isoform 1
nr
ID KDP40661.1
description hypothetical protein JCGZ_24660 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KWS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24660 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36171: 58636-58715 , PASA_asmbl_36172: 58716-58886 , PASA_asmbl_36173: 59397-64729 , PASA_asmbl_36174: 66521-66969 , PASA_asmbl_36175: 64778-70292
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_040 0.0 - - hypothetical protein JCGZ_24660 [Jatropha curcas]
2 Hb_004096_240 0.0936532979 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
3 Hb_000365_100 0.096945353 - - PREDICTED: probable galacturonosyltransferase 7 isoform X1 [Jatropha curcas]
4 Hb_000120_210 0.0973069367 - - PREDICTED: uncharacterized protein LOC105630189 [Jatropha curcas]
5 Hb_005895_010 0.0978995535 - - PREDICTED: uncharacterized protein LOC105643387 isoform X1 [Jatropha curcas]
6 Hb_069662_010 0.0996191181 - - PREDICTED: uncharacterized protein LOC103320051 [Prunus mume]
7 Hb_001876_040 0.1004042047 - - PREDICTED: mucin-5B [Jatropha curcas]
8 Hb_002774_190 0.100910988 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
9 Hb_000836_290 0.1012643888 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
10 Hb_002871_140 0.1017421229 - - hypothetical protein JCGZ_06847 [Jatropha curcas]
11 Hb_000589_110 0.1031821942 - - PREDICTED: uncharacterized protein LOC105647614 isoform X1 [Jatropha curcas]
12 Hb_171334_010 0.1039880408 - - PREDICTED: CDPK-related kinase 5 [Jatropha curcas]
13 Hb_000212_120 0.1047813855 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
14 Hb_012262_040 0.1056470816 - - PREDICTED: uncharacterized protein LOC105633697 [Jatropha curcas]
15 Hb_000071_150 0.1070150389 - - Stearoy-ACP desaturase [Ricinus communis]
16 Hb_032202_220 0.1077748342 - - ring finger protein, putative [Ricinus communis]
17 Hb_000022_190 0.1080604393 - - PREDICTED: pentatricopeptide repeat-containing protein At3g22690-like [Jatropha curcas]
18 Hb_000445_140 0.1082963343 - - hypothetical protein RCOM_0561550 [Ricinus communis]
19 Hb_013405_080 0.10927378 - - PREDICTED: proline--tRNA ligase [Jatropha curcas]
20 Hb_000069_570 0.1092884067 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000347_040 Hb_000347_040 Hb_004096_240 Hb_004096_240 Hb_000347_040--Hb_004096_240 Hb_000365_100 Hb_000365_100 Hb_000347_040--Hb_000365_100 Hb_000120_210 Hb_000120_210 Hb_000347_040--Hb_000120_210 Hb_005895_010 Hb_005895_010 Hb_000347_040--Hb_005895_010 Hb_069662_010 Hb_069662_010 Hb_000347_040--Hb_069662_010 Hb_001876_040 Hb_001876_040 Hb_000347_040--Hb_001876_040 Hb_004096_240--Hb_000120_210 Hb_030414_040 Hb_030414_040 Hb_004096_240--Hb_030414_040 Hb_031284_010 Hb_031284_010 Hb_004096_240--Hb_031284_010 Hb_000375_390 Hb_000375_390 Hb_004096_240--Hb_000375_390 Hb_021943_080 Hb_021943_080 Hb_004096_240--Hb_021943_080 Hb_003186_020 Hb_003186_020 Hb_004096_240--Hb_003186_020 Hb_000136_140 Hb_000136_140 Hb_000365_100--Hb_000136_140 Hb_001604_120 Hb_001604_120 Hb_000365_100--Hb_001604_120 Hb_000188_050 Hb_000188_050 Hb_000365_100--Hb_000188_050 Hb_013726_080 Hb_013726_080 Hb_000365_100--Hb_013726_080 Hb_002498_140 Hb_002498_140 Hb_000365_100--Hb_002498_140 Hb_000120_210--Hb_030414_040 Hb_000120_210--Hb_031284_010 Hb_001153_210 Hb_001153_210 Hb_000120_210--Hb_001153_210 Hb_000111_170 Hb_000111_170 Hb_000120_210--Hb_000111_170 Hb_000120_210--Hb_021943_080 Hb_000362_170 Hb_000362_170 Hb_005895_010--Hb_000362_170 Hb_002539_110 Hb_002539_110 Hb_005895_010--Hb_002539_110 Hb_007800_020 Hb_007800_020 Hb_005895_010--Hb_007800_020 Hb_002014_040 Hb_002014_040 Hb_005895_010--Hb_002014_040 Hb_001002_060 Hb_001002_060 Hb_005895_010--Hb_001002_060 Hb_000640_070 Hb_000640_070 Hb_005895_010--Hb_000640_070 Hb_004531_140 Hb_004531_140 Hb_069662_010--Hb_004531_140 Hb_000608_380 Hb_000608_380 Hb_069662_010--Hb_000608_380 Hb_021346_030 Hb_021346_030 Hb_069662_010--Hb_021346_030 Hb_002184_150 Hb_002184_150 Hb_069662_010--Hb_002184_150 Hb_001205_300 Hb_001205_300 Hb_069662_010--Hb_001205_300 Hb_002079_030 Hb_002079_030 Hb_069662_010--Hb_002079_030 Hb_001157_230 Hb_001157_230 Hb_001876_040--Hb_001157_230 Hb_022250_010 Hb_022250_010 Hb_001876_040--Hb_022250_010 Hb_000212_120 Hb_000212_120 Hb_001876_040--Hb_000212_120 Hb_032202_220 Hb_032202_220 Hb_001876_040--Hb_032202_220 Hb_024184_010 Hb_024184_010 Hb_001876_040--Hb_024184_010 Hb_002027_080 Hb_002027_080 Hb_001876_040--Hb_002027_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.23024 6.49748 13.8524 13.576 10.5747 11.5502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.65094 6.4071 4.20833 5.07773 17.4141

CAGE analysis