Hb_000347_080

Information

Type -
Description -
Location Contig347: 88636-93227
Sequence    

Annotation

kegg
ID egr:104449410
description 25.3 kDa vesicle transport protein
nr
ID XP_012068842.1
description PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
swissprot
ID Q94AU2
description 25.3 kDa vesicle transport protein OS=Arabidopsis thaliana GN=SEC22 PE=2 SV=1
trembl
ID A0A067L845
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24664 PE=4 SV=1
Gene Ontology
ID GO:0005886
description kda vesicle transport protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36180: 88689-92896
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_080 0.0 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
2 Hb_001956_120 0.0702532661 - - conserved hypothetical protein [Ricinus communis]
3 Hb_012977_010 0.0810344332 - - PREDICTED: uncharacterized protein LOC105131558 [Populus euphratica]
4 Hb_000205_120 0.0844031893 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
5 Hb_004447_030 0.0845028845 - - PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]
6 Hb_000976_270 0.0880463692 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
7 Hb_004449_220 0.0922102186 transcription factor TF Family: C2H2 PREDICTED: uncharacterized zinc finger protein At4g06634 [Jatropha curcas]
8 Hb_001663_110 0.0958375921 - - RNA binding protein, putative [Ricinus communis]
9 Hb_000062_230 0.0969371818 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
10 Hb_000176_110 0.0984908773 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
11 Hb_001969_040 0.1025889916 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
12 Hb_003352_050 0.1032102846 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
13 Hb_004724_430 0.105173644 - - PREDICTED: F-box protein At2g27310 [Jatropha curcas]
14 Hb_009421_100 0.1059584863 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
15 Hb_000363_340 0.1059888702 - - PREDICTED: syntaxin-52-like isoform X2 [Jatropha curcas]
16 Hb_011644_020 0.107200629 - - PREDICTED: choline-phosphate cytidylyltransferase 2 [Vitis vinifera]
17 Hb_002377_040 0.1074927404 - - serine/threonine protein kinase, putative [Ricinus communis]
18 Hb_000236_280 0.1089691309 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
19 Hb_000529_080 0.1095802717 - - PREDICTED: uncharacterized protein LOC105641675 [Jatropha curcas]
20 Hb_003006_060 0.112055372 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]

Gene co-expression network

sample Hb_000347_080 Hb_000347_080 Hb_001956_120 Hb_001956_120 Hb_000347_080--Hb_001956_120 Hb_012977_010 Hb_012977_010 Hb_000347_080--Hb_012977_010 Hb_000205_120 Hb_000205_120 Hb_000347_080--Hb_000205_120 Hb_004447_030 Hb_004447_030 Hb_000347_080--Hb_004447_030 Hb_000976_270 Hb_000976_270 Hb_000347_080--Hb_000976_270 Hb_004449_220 Hb_004449_220 Hb_000347_080--Hb_004449_220 Hb_004374_010 Hb_004374_010 Hb_001956_120--Hb_004374_010 Hb_001956_120--Hb_000976_270 Hb_011537_040 Hb_011537_040 Hb_001956_120--Hb_011537_040 Hb_000062_230 Hb_000062_230 Hb_001956_120--Hb_000062_230 Hb_001663_110 Hb_001663_110 Hb_001956_120--Hb_001663_110 Hb_005725_070 Hb_005725_070 Hb_012977_010--Hb_005725_070 Hb_001969_040 Hb_001969_040 Hb_012977_010--Hb_001969_040 Hb_007786_010 Hb_007786_010 Hb_012977_010--Hb_007786_010 Hb_000363_340 Hb_000363_340 Hb_012977_010--Hb_000363_340 Hb_000165_130 Hb_000165_130 Hb_012977_010--Hb_000165_130 Hb_000529_080 Hb_000529_080 Hb_000205_120--Hb_000529_080 Hb_000265_150 Hb_000265_150 Hb_000205_120--Hb_000265_150 Hb_000205_120--Hb_004447_030 Hb_008887_050 Hb_008887_050 Hb_000205_120--Hb_008887_050 Hb_000205_120--Hb_000976_270 Hb_010968_010 Hb_010968_010 Hb_000205_120--Hb_010968_010 Hb_004447_030--Hb_001663_110 Hb_004447_030--Hb_000976_270 Hb_004447_030--Hb_000265_150 Hb_004447_030--Hb_000529_080 Hb_000976_270--Hb_001663_110 Hb_000209_090 Hb_000209_090 Hb_000976_270--Hb_000209_090 Hb_004525_100 Hb_004525_100 Hb_000976_270--Hb_004525_100 Hb_000120_240 Hb_000120_240 Hb_004449_220--Hb_000120_240 Hb_004449_220--Hb_001969_040 Hb_000186_280 Hb_000186_280 Hb_004449_220--Hb_000186_280 Hb_004449_220--Hb_000205_120 Hb_004678_060 Hb_004678_060 Hb_004449_220--Hb_004678_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
208.61 25.6514 44.8719 40.9015 169.86 162.721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
97.7168 59.7672 46.4672 24.1523 17.2811

CAGE analysis