Hb_000347_120

Information

Type -
Description -
Location Contig347: 128743-138608
Sequence    

Annotation

kegg
ID rcu:RCOM_0684820
description DNA binding protein, putative
nr
ID XP_012068847.1
description PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L9A1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24668 PE=4 SV=1
Gene Ontology
ID GO:0000124
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36188: 128749-138463 , PASA_asmbl_36189: 134755-138463
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_120 0.0 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]
2 Hb_000373_100 0.0528633081 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
3 Hb_005389_160 0.0677485342 - - PREDICTED: casein kinase I [Jatropha curcas]
4 Hb_010417_070 0.0739359848 - - PREDICTED: uncharacterized protein LOC105645744 isoform X1 [Jatropha curcas]
5 Hb_004440_040 0.0762182737 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_000094_320 0.0780734968 - - hypothetical protein JCGZ_04407 [Jatropha curcas]
7 Hb_004410_070 0.0802328762 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
8 Hb_007193_110 0.0841009195 - - PREDICTED: E3 ubiquitin-protein ligase RNF14 [Jatropha curcas]
9 Hb_000442_010 0.0860353419 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
10 Hb_000556_170 0.0868792055 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
11 Hb_004371_010 0.0873336415 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
12 Hb_007054_040 0.0886066809 - - PREDICTED: protein RST1 [Jatropha curcas]
13 Hb_002263_040 0.0886949461 - - carbon catabolite repressor protein, putative [Ricinus communis]
14 Hb_000703_200 0.0910650367 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
15 Hb_005542_050 0.0921405846 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
16 Hb_010661_020 0.0924567619 - - PREDICTED: uncharacterized protein LOC105630767 isoform X1 [Jatropha curcas]
17 Hb_000735_160 0.0943835244 - - PREDICTED: uncharacterized protein LOC105644513 [Jatropha curcas]
18 Hb_004899_040 0.0950683756 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
19 Hb_001534_210 0.0959931222 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
20 Hb_004032_040 0.0968789655 - - unknown [Medicago truncatula]

Gene co-expression network

sample Hb_000347_120 Hb_000347_120 Hb_000373_100 Hb_000373_100 Hb_000347_120--Hb_000373_100 Hb_005389_160 Hb_005389_160 Hb_000347_120--Hb_005389_160 Hb_010417_070 Hb_010417_070 Hb_000347_120--Hb_010417_070 Hb_004440_040 Hb_004440_040 Hb_000347_120--Hb_004440_040 Hb_000094_320 Hb_000094_320 Hb_000347_120--Hb_000094_320 Hb_004410_070 Hb_004410_070 Hb_000347_120--Hb_004410_070 Hb_000373_100--Hb_005389_160 Hb_007054_040 Hb_007054_040 Hb_000373_100--Hb_007054_040 Hb_000703_200 Hb_000703_200 Hb_000373_100--Hb_000703_200 Hb_000373_100--Hb_010417_070 Hb_001545_150 Hb_001545_150 Hb_000373_100--Hb_001545_150 Hb_005389_160--Hb_010417_070 Hb_000363_120 Hb_000363_120 Hb_005389_160--Hb_000363_120 Hb_001104_170 Hb_001104_170 Hb_005389_160--Hb_001104_170 Hb_003398_080 Hb_003398_080 Hb_005389_160--Hb_003398_080 Hb_060094_020 Hb_060094_020 Hb_010417_070--Hb_060094_020 Hb_003866_080 Hb_003866_080 Hb_010417_070--Hb_003866_080 Hb_001534_210 Hb_001534_210 Hb_010417_070--Hb_001534_210 Hb_010417_070--Hb_004410_070 Hb_002085_030 Hb_002085_030 Hb_010417_070--Hb_002085_030 Hb_011930_110 Hb_011930_110 Hb_004440_040--Hb_011930_110 Hb_002263_040 Hb_002263_040 Hb_004440_040--Hb_002263_040 Hb_002636_100 Hb_002636_100 Hb_004440_040--Hb_002636_100 Hb_003055_060 Hb_003055_060 Hb_004440_040--Hb_003055_060 Hb_001766_020 Hb_001766_020 Hb_004440_040--Hb_001766_020 Hb_004371_010 Hb_004371_010 Hb_000094_320--Hb_004371_010 Hb_007193_110 Hb_007193_110 Hb_000094_320--Hb_007193_110 Hb_012114_050 Hb_012114_050 Hb_000094_320--Hb_012114_050 Hb_000526_060 Hb_000526_060 Hb_000094_320--Hb_000526_060 Hb_000094_320--Hb_004410_070 Hb_007017_070 Hb_007017_070 Hb_004410_070--Hb_007017_070 Hb_000723_110 Hb_000723_110 Hb_004410_070--Hb_000723_110 Hb_002542_130 Hb_002542_130 Hb_004410_070--Hb_002542_130 Hb_000700_060 Hb_000700_060 Hb_004410_070--Hb_000700_060 Hb_000069_130 Hb_000069_130 Hb_004410_070--Hb_000069_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.278 41.0163 16.1335 8.91133 14.5049 13.2707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.94056 9.19075 12.3413 15.0472 13.1944

CAGE analysis