Hb_000347_140

Information

Type -
Description -
Location Contig347: 167136-170667
Sequence    

Annotation

kegg
ID pop:POPTR_0001s16620g
description hypothetical protein
nr
ID XP_012068850.1
description PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID Q940U6
description Protein FLUORESCENT IN BLUE LIGHT, chloroplastic OS=Arabidopsis thaliana GN=FLU PE=1 SV=1
trembl
ID U5GW21
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s16620g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36193: 167064-170772 , PASA_asmbl_36194: 167095-170746 , PASA_asmbl_36195: 167689-169433
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_140 0.0 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_003430_040 0.0964183502 - - spermidine synthase 1, putative [Ricinus communis]
3 Hb_074792_010 0.1099009176 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
4 Hb_000300_710 0.1099622948 - - PREDICTED: uncharacterized protein LOC105123549 [Populus euphratica]
5 Hb_188739_010 0.1236793948 - - protein binding protein, putative [Ricinus communis]
6 Hb_000032_200 0.1244558683 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
7 Hb_000638_260 0.1316639407 - - hypothetical protein JCGZ_06730 [Jatropha curcas]
8 Hb_003874_010 0.1370285517 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
9 Hb_000207_140 0.1389313847 - - hypothetical protein POPTR_0019s11310g [Populus trichocarpa]
10 Hb_024973_020 0.1396430792 - - Protein regulator of cytokinesis, putative [Ricinus communis]
11 Hb_004517_030 0.1402047243 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002435_090 0.1407444366 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
13 Hb_007545_110 0.1454624003 - - catalytic, putative [Ricinus communis]
14 Hb_000392_450 0.1472303245 - - PREDICTED: isochorismate synthase 2, chloroplastic [Jatropha curcas]
15 Hb_029510_130 0.1520849177 - - PREDICTED: malonate--CoA ligase [Jatropha curcas]
16 Hb_000732_030 0.153350172 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007123_080 0.1540356093 - - big map kinase/bmk, putative [Ricinus communis]
18 Hb_004846_230 0.1608657434 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
19 Hb_003992_050 0.1611340858 - - delta 9 desaturase, putative [Ricinus communis]
20 Hb_038044_010 0.1619069092 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]

Gene co-expression network

sample Hb_000347_140 Hb_000347_140 Hb_003430_040 Hb_003430_040 Hb_000347_140--Hb_003430_040 Hb_074792_010 Hb_074792_010 Hb_000347_140--Hb_074792_010 Hb_000300_710 Hb_000300_710 Hb_000347_140--Hb_000300_710 Hb_188739_010 Hb_188739_010 Hb_000347_140--Hb_188739_010 Hb_000032_200 Hb_000032_200 Hb_000347_140--Hb_000032_200 Hb_000638_260 Hb_000638_260 Hb_000347_140--Hb_000638_260 Hb_003430_040--Hb_074792_010 Hb_003874_010 Hb_003874_010 Hb_003430_040--Hb_003874_010 Hb_000732_030 Hb_000732_030 Hb_003430_040--Hb_000732_030 Hb_003430_040--Hb_000032_200 Hb_003430_040--Hb_000300_710 Hb_074792_010--Hb_000300_710 Hb_074792_010--Hb_000732_030 Hb_074792_010--Hb_000638_260 Hb_074792_010--Hb_003874_010 Hb_000300_710--Hb_003874_010 Hb_000300_710--Hb_188739_010 Hb_000424_070 Hb_000424_070 Hb_000300_710--Hb_000424_070 Hb_002435_090 Hb_002435_090 Hb_188739_010--Hb_002435_090 Hb_000207_140 Hb_000207_140 Hb_188739_010--Hb_000207_140 Hb_001975_050 Hb_001975_050 Hb_188739_010--Hb_001975_050 Hb_001343_120 Hb_001343_120 Hb_188739_010--Hb_001343_120 Hb_001141_050 Hb_001141_050 Hb_000032_200--Hb_001141_050 Hb_003106_200 Hb_003106_200 Hb_000032_200--Hb_003106_200 Hb_012787_030 Hb_012787_030 Hb_000032_200--Hb_012787_030 Hb_000032_200--Hb_000732_030 Hb_028487_120 Hb_028487_120 Hb_000638_260--Hb_028487_120 Hb_000345_410 Hb_000345_410 Hb_000638_260--Hb_000345_410 Hb_008406_100 Hb_008406_100 Hb_000638_260--Hb_008406_100 Hb_000638_260--Hb_003430_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.51018 8.56664 70.9075 11.6053 5.21612 3.70982
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.46041 5.11214 2.37706 4.37882 10.172

CAGE analysis