Hb_000347_150

Information

Type -
Description -
Location Contig347: 175197-180772
Sequence    

Annotation

kegg
ID gmx:100781227
description nucleolysin TIAR-like
nr
ID XP_010111985.1
description Nucleolysin TIAR [Morus notabilis]
swissprot
ID Q9LJH8
description Oligouridylate-binding protein 1C OS=Arabidopsis thaliana GN=UBP1C PE=1 SV=1
trembl
ID W9S9K5
description Nucleolysin TIAR OS=Morus notabilis GN=L484_008158 PE=4 SV=1
Gene Ontology
ID GO:0000166
description nucleolysin tiar

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36196: 175235-180695 , PASA_asmbl_36197: 179825-180123
cDNA
(Sanger)
(ID:Location)		 032_H08.ab1: 175410-176153

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_150 0.0 - - Nucleolysin TIAR [Morus notabilis]
2 Hb_000270_020 0.0834161923 - - hypothetical protein POPTR_0015s07630g [Populus trichocarpa]
3 Hb_003299_090 0.0996968807 - - hypothetical protein PRUPE_ppa011647mg [Prunus persica]
4 Hb_000453_270 0.1187538055 - - PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 [Propithecus coquereli]
5 Hb_000035_120 0.1188264764 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Jatropha curcas]
6 Hb_005914_090 0.1222059461 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
7 Hb_001307_140 0.1249137956 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Jatropha curcas]
8 Hb_006740_020 0.1252547811 - - PREDICTED: bis(5'-adenosyl)-triphosphatase [Jatropha curcas]
9 Hb_002235_360 0.1254538308 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Jatropha curcas]
10 Hb_000878_130 0.1272793849 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003494_240 0.1276505272 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
12 Hb_143947_010 0.1323900723 - - PREDICTED: deSI-like protein At4g17486 isoform X2 [Pyrus x bretschneideri]
13 Hb_110364_010 0.1332088005 - - gamma-tubulin complex component, putative [Ricinus communis]
14 Hb_000260_090 0.1366137621 - - PREDICTED: ubiquitin-conjugating enzyme E2 28 [Gossypium raimondii]
15 Hb_010298_010 0.1368962961 - - PREDICTED: uncharacterized protein At2g02148 [Jatropha curcas]
16 Hb_000575_080 0.1394458216 - - PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 isoform X1 [Jatropha curcas]
17 Hb_001431_070 0.1411624447 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
18 Hb_000017_340 0.142484224 - - PREDICTED: GMP synthase [glutamine-hydrolyzing]-like [Phoenix dactylifera]
19 Hb_001454_060 0.1428951191 - - uncharacterized protein LOC100527252 [Glycine max]
20 Hb_000977_310 0.1432638957 - - PREDICTED: gamma-tubulin complex component 2 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_000347_150 Hb_000347_150 Hb_000270_020 Hb_000270_020 Hb_000347_150--Hb_000270_020 Hb_003299_090 Hb_003299_090 Hb_000347_150--Hb_003299_090 Hb_000453_270 Hb_000453_270 Hb_000347_150--Hb_000453_270 Hb_000035_120 Hb_000035_120 Hb_000347_150--Hb_000035_120 Hb_005914_090 Hb_005914_090 Hb_000347_150--Hb_005914_090 Hb_001307_140 Hb_001307_140 Hb_000347_150--Hb_001307_140 Hb_000575_080 Hb_000575_080 Hb_000270_020--Hb_000575_080 Hb_000270_020--Hb_003299_090 Hb_000270_020--Hb_001307_140 Hb_003073_210 Hb_003073_210 Hb_000270_020--Hb_003073_210 Hb_139859_010 Hb_139859_010 Hb_000270_020--Hb_139859_010 Hb_005635_010 Hb_005635_010 Hb_003299_090--Hb_005635_010 Hb_003299_090--Hb_005914_090 Hb_003299_090--Hb_001307_140 Hb_012016_020 Hb_012016_020 Hb_003299_090--Hb_012016_020 Hb_000453_270--Hb_001307_140 Hb_063047_010 Hb_063047_010 Hb_000453_270--Hb_063047_010 Hb_000703_080 Hb_000703_080 Hb_000453_270--Hb_000703_080 Hb_002235_360 Hb_002235_360 Hb_000453_270--Hb_002235_360 Hb_010298_010 Hb_010298_010 Hb_000453_270--Hb_010298_010 Hb_000152_740 Hb_000152_740 Hb_000453_270--Hb_000152_740 Hb_000538_080 Hb_000538_080 Hb_000035_120--Hb_000538_080 Hb_000878_130 Hb_000878_130 Hb_000035_120--Hb_000878_130 Hb_000035_130 Hb_000035_130 Hb_000035_120--Hb_000035_130 Hb_000035_120--Hb_002235_360 Hb_002477_260 Hb_002477_260 Hb_000035_120--Hb_002477_260 Hb_000453_080 Hb_000453_080 Hb_005914_090--Hb_000453_080 Hb_005914_090--Hb_012016_020 Hb_001431_070 Hb_001431_070 Hb_005914_090--Hb_001431_070 Hb_005914_090--Hb_139859_010 Hb_110364_010 Hb_110364_010 Hb_001307_140--Hb_110364_010 Hb_001307_140--Hb_063047_010 Hb_001040_160 Hb_001040_160 Hb_001307_140--Hb_001040_160 Hb_000568_040 Hb_000568_040 Hb_001307_140--Hb_000568_040 Hb_001943_010 Hb_001943_010 Hb_001307_140--Hb_001943_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
344.603 299.18 17.0286 55.8512 336.872 981.878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
325.758 172.976 280.012 128.041 26.1542

CAGE analysis