Hb_000347_170

Information

Type -
Description -
Location Contig347: 195929-198232
Sequence    

Annotation

kegg
ID rcu:RCOM_0392170
description Serine/threonine-protein kinase PBS1, putative
nr
ID XP_002532730.1
description Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
swissprot
ID Q9M1L7
description Pollen receptor-like kinase 3 OS=Arabidopsis thaliana GN=PRK3 PE=1 SV=1
trembl
ID B9T3B1
description Serine/threonine-protein kinase PBS1, putative OS=Ricinus communis GN=RCOM_0392170 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable inactive leucine-rich repeat receptor-like protein kinase at5g20690

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36203: 197257-197864
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_170 0.0 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
2 Hb_004223_120 0.0947241816 - - PREDICTED: protein SPA, chloroplastic [Jatropha curcas]
3 Hb_006649_100 0.0973378106 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
4 Hb_003411_070 0.0998757638 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Populus euphratica]
5 Hb_031862_190 0.102390731 - - -
6 Hb_009293_030 0.1054843807 - - PREDICTED: salicylate carboxymethyltransferase [Jatropha curcas]
7 Hb_000187_100 0.1059505435 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
8 Hb_000431_080 0.1119472454 - - PREDICTED: uncharacterized protein LOC105632547 [Jatropha curcas]
9 Hb_000574_380 0.1166648209 - - hydrolase, putative [Ricinus communis]
10 Hb_001329_060 0.1173016239 - - Polygalacturonase precursor, putative [Ricinus communis]
11 Hb_000735_190 0.1196702784 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
12 Hb_000751_010 0.1208395261 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008195_100 0.122587245 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
14 Hb_003702_010 0.1229623291 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
15 Hb_000160_260 0.1231953471 - - nutrient reservoir, putative [Ricinus communis]
16 Hb_001946_070 0.1247853281 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
17 Hb_002799_120 0.1251104211 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
18 Hb_001123_340 0.1252420886 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]
19 Hb_002259_020 0.1259319994 - - PREDICTED: uncharacterized protein LOC105646333 [Jatropha curcas]
20 Hb_025048_050 0.1273384595 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000347_170 Hb_000347_170 Hb_004223_120 Hb_004223_120 Hb_000347_170--Hb_004223_120 Hb_006649_100 Hb_006649_100 Hb_000347_170--Hb_006649_100 Hb_003411_070 Hb_003411_070 Hb_000347_170--Hb_003411_070 Hb_031862_190 Hb_031862_190 Hb_000347_170--Hb_031862_190 Hb_009293_030 Hb_009293_030 Hb_000347_170--Hb_009293_030 Hb_000187_100 Hb_000187_100 Hb_000347_170--Hb_000187_100 Hb_004223_120--Hb_000187_100 Hb_004223_120--Hb_009293_030 Hb_030565_020 Hb_030565_020 Hb_004223_120--Hb_030565_020 Hb_002259_020 Hb_002259_020 Hb_004223_120--Hb_002259_020 Hb_004223_120--Hb_006649_100 Hb_001401_050 Hb_001401_050 Hb_004223_120--Hb_001401_050 Hb_006649_100--Hb_003411_070 Hb_005375_100 Hb_005375_100 Hb_006649_100--Hb_005375_100 Hb_006649_100--Hb_009293_030 Hb_000173_330 Hb_000173_330 Hb_006649_100--Hb_000173_330 Hb_003702_010 Hb_003702_010 Hb_006649_100--Hb_003702_010 Hb_003411_070--Hb_031862_190 Hb_001329_060 Hb_001329_060 Hb_003411_070--Hb_001329_060 Hb_000751_010 Hb_000751_010 Hb_003411_070--Hb_000751_010 Hb_000735_190 Hb_000735_190 Hb_003411_070--Hb_000735_190 Hb_001946_070 Hb_001946_070 Hb_003411_070--Hb_001946_070 Hb_003411_070--Hb_009293_030 Hb_031862_190--Hb_000751_010 Hb_031862_190--Hb_000735_190 Hb_031862_190--Hb_001329_060 Hb_031862_190--Hb_009293_030 Hb_102129_040 Hb_102129_040 Hb_031862_190--Hb_102129_040 Hb_009846_010 Hb_009846_010 Hb_009293_030--Hb_009846_010 Hb_009293_030--Hb_001329_060 Hb_009293_030--Hb_001946_070 Hb_000187_100--Hb_031862_190 Hb_000187_100--Hb_003411_070 Hb_005365_040 Hb_005365_040 Hb_000187_100--Hb_005365_040 Hb_000187_100--Hb_003702_010 Hb_000431_080 Hb_000431_080 Hb_000187_100--Hb_000431_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0230798 0.016909 2.03591 0.252991 0.00871453 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.021149 0 0 0.00661694 0.528409

CAGE analysis