Hb_000347_190

Information

Type -
Description -
Location Contig347: 206469-211369
Sequence    

Annotation

kegg
ID rcu:RCOM_0392150
description ptm1, putative
nr
ID XP_012068854.1
description PREDICTED: transmembrane protein 87A [Jatropha curcas]
swissprot
ID Q28EW0
description Transmembrane protein 87A OS=Xenopus tropicalis GN=tmem87a PE=2 SV=1
trembl
ID A0A067KWU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24675 PE=4 SV=1
Gene Ontology
ID GO:0005794
description transmembrane protein 87a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36207: 206419-211220 , PASA_asmbl_36208: 212280-217162
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_190 0.0 - - PREDICTED: transmembrane protein 87A [Jatropha curcas]
2 Hb_001493_060 0.110484223 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
3 Hb_004242_170 0.1126860555 - - calcium/calmodulin-regulated receptor-like kinase [Manihot esculenta]
4 Hb_000350_030 0.1231535921 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00277 [Jatropha curcas]
5 Hb_003006_090 0.1233106865 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
6 Hb_001677_040 0.1289072368 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
7 Hb_035834_010 0.1315794518 - - zinc finger protein, putative [Ricinus communis]
8 Hb_009079_050 0.1354060666 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
9 Hb_000056_110 0.1355877176 - - PREDICTED: uncharacterized protein LOC105630405 [Jatropha curcas]
10 Hb_001195_660 0.135989559 - - metalloendopeptidase, putative [Ricinus communis]
11 Hb_001053_020 0.1365896886 - - carotenoid cleavage dioxygenase 1 [Manihot esculenta]
12 Hb_001348_090 0.1367636361 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
13 Hb_000445_370 0.1368091268 - - PREDICTED: probable methyltransferase PMT24 [Jatropha curcas]
14 Hb_000441_050 0.1368963143 - - PREDICTED: 187-kDa microtubule-associated protein AIR9 [Jatropha curcas]
15 Hb_002164_020 0.1393288736 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000959_300 0.1397746213 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
17 Hb_012799_190 0.1404835259 - - PREDICTED: uncharacterized protein LOC105648490 [Jatropha curcas]
18 Hb_034168_050 0.1422578468 - - Photosystem I assembly protein Ycf3 [Medicago truncatula]
19 Hb_026549_070 0.1426083009 - - PREDICTED: UDP-glucuronic acid decarboxylase 1 [Jatropha curcas]
20 Hb_004899_340 0.1429075601 - - PREDICTED: probable polygalacturonase [Jatropha curcas]

Gene co-expression network

sample Hb_000347_190 Hb_000347_190 Hb_001493_060 Hb_001493_060 Hb_000347_190--Hb_001493_060 Hb_004242_170 Hb_004242_170 Hb_000347_190--Hb_004242_170 Hb_000350_030 Hb_000350_030 Hb_000347_190--Hb_000350_030 Hb_003006_090 Hb_003006_090 Hb_000347_190--Hb_003006_090 Hb_001677_040 Hb_001677_040 Hb_000347_190--Hb_001677_040 Hb_035834_010 Hb_035834_010 Hb_000347_190--Hb_035834_010 Hb_002164_020 Hb_002164_020 Hb_001493_060--Hb_002164_020 Hb_002596_080 Hb_002596_080 Hb_001493_060--Hb_002596_080 Hb_009079_050 Hb_009079_050 Hb_001493_060--Hb_009079_050 Hb_000580_110 Hb_000580_110 Hb_001493_060--Hb_000580_110 Hb_001195_090 Hb_001195_090 Hb_001493_060--Hb_001195_090 Hb_000441_050 Hb_000441_050 Hb_004242_170--Hb_000441_050 Hb_001053_020 Hb_001053_020 Hb_004242_170--Hb_001053_020 Hb_000108_150 Hb_000108_150 Hb_004242_170--Hb_000108_150 Hb_005977_060 Hb_005977_060 Hb_004242_170--Hb_005977_060 Hb_001348_090 Hb_001348_090 Hb_004242_170--Hb_001348_090 Hb_009692_040 Hb_009692_040 Hb_004242_170--Hb_009692_040 Hb_000350_030--Hb_001677_040 Hb_181838_010 Hb_181838_010 Hb_000350_030--Hb_181838_010 Hb_032631_020 Hb_032631_020 Hb_000350_030--Hb_032631_020 Hb_000056_110 Hb_000056_110 Hb_000350_030--Hb_000056_110 Hb_105033_010 Hb_105033_010 Hb_000350_030--Hb_105033_010 Hb_000271_220 Hb_000271_220 Hb_003006_090--Hb_000271_220 Hb_002542_060 Hb_002542_060 Hb_003006_090--Hb_002542_060 Hb_003462_040 Hb_003462_040 Hb_003006_090--Hb_003462_040 Hb_001195_660 Hb_001195_660 Hb_003006_090--Hb_001195_660 Hb_003006_090--Hb_001677_040 Hb_000603_020 Hb_000603_020 Hb_003006_090--Hb_000603_020 Hb_001677_040--Hb_001195_660 Hb_000417_050 Hb_000417_050 Hb_001677_040--Hb_000417_050 Hb_000333_030 Hb_000333_030 Hb_001677_040--Hb_000333_030 Hb_002662_110 Hb_002662_110 Hb_001677_040--Hb_002662_110 Hb_002675_080 Hb_002675_080 Hb_001677_040--Hb_002675_080 Hb_001677_040--Hb_001053_020 Hb_036388_010 Hb_036388_010 Hb_035834_010--Hb_036388_010 Hb_000445_370 Hb_000445_370 Hb_035834_010--Hb_000445_370 Hb_003783_050 Hb_003783_050 Hb_035834_010--Hb_003783_050 Hb_035834_010--Hb_000441_050 Hb_035834_010--Hb_004242_170 Hb_000120_740 Hb_000120_740 Hb_035834_010--Hb_000120_740
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.27333 4.76864 14.1943 27.1224 3.0164 5.66911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.2309 1.11749 1.62273 5.50039 31.9592

CAGE analysis