Hb_000347_200

Information

Type -
Description -
Location Contig347: 212268-217193
Sequence    

Annotation

kegg
ID rcu:RCOM_0392140
description lsm1, putative
nr
ID XP_002532727.1
description lsm1, putative [Ricinus communis]
swissprot
ID Q8LFL8
description Sm-like protein LSM1B OS=Arabidopsis thaliana GN=LSM1B PE=1 SV=1
trembl
ID B9T3A8
description Lsm1, putative OS=Ricinus communis GN=RCOM_0392140 PE=4 SV=1
Gene Ontology
ID GO:0000932
description u6 snrna-associated sm-like protein lsm1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36208: 212280-217162 , PASA_asmbl_36211: 214583-215261 , PASA_asmbl_36213: 213205-213537
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_200 0.0 - - lsm1, putative [Ricinus communis]
2 Hb_000173_340 0.0581304241 - - hypothetical protein JCGZ_02075 [Jatropha curcas]
3 Hb_000700_110 0.0672204944 - - Vesicle-associated membrane protein, putative [Ricinus communis]
4 Hb_006198_080 0.0816266 - - hypothetical protein MIMGU_mgv1a013452mg [Erythranthe guttata]
5 Hb_003092_030 0.0829105893 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
6 Hb_012305_050 0.0868320037 - - unnamed protein product [Coffea canephora]
7 Hb_000024_080 0.0909358365 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
8 Hb_000045_090 0.0934775894 - - PREDICTED: syntaxin-31 [Jatropha curcas]
9 Hb_002477_330 0.0941918622 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
10 Hb_004128_190 0.09582841 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
11 Hb_148644_010 0.0978740863 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
12 Hb_000620_080 0.0983044167 - - hypothetical protein F775_32679 [Aegilops tauschii]
13 Hb_000041_050 0.0984869318 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
14 Hb_005117_010 0.0989285603 - - PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Jatropha curcas]
15 Hb_000914_070 0.0991370118 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
16 Hb_004055_140 0.0998707806 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
17 Hb_000107_310 0.1007901481 - - PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Jatropha curcas]
18 Hb_003847_080 0.1015116973 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
19 Hb_005686_060 0.1022784383 - - PREDICTED: uncharacterized protein LOC101508199 [Cicer arietinum]
20 Hb_012653_040 0.1033270369 - - UV-induced protein uvi31, putative [Ricinus communis]

Gene co-expression network

sample Hb_000347_200 Hb_000347_200 Hb_000173_340 Hb_000173_340 Hb_000347_200--Hb_000173_340 Hb_000700_110 Hb_000700_110 Hb_000347_200--Hb_000700_110 Hb_006198_080 Hb_006198_080 Hb_000347_200--Hb_006198_080 Hb_003092_030 Hb_003092_030 Hb_000347_200--Hb_003092_030 Hb_012305_050 Hb_012305_050 Hb_000347_200--Hb_012305_050 Hb_000024_080 Hb_000024_080 Hb_000347_200--Hb_000024_080 Hb_000173_340--Hb_000700_110 Hb_005117_010 Hb_005117_010 Hb_000173_340--Hb_005117_010 Hb_001898_220 Hb_001898_220 Hb_000173_340--Hb_001898_220 Hb_000914_070 Hb_000914_070 Hb_000173_340--Hb_000914_070 Hb_000000_250 Hb_000000_250 Hb_000173_340--Hb_000000_250 Hb_148644_010 Hb_148644_010 Hb_000700_110--Hb_148644_010 Hb_000700_110--Hb_003092_030 Hb_000041_050 Hb_000041_050 Hb_000700_110--Hb_000041_050 Hb_000700_110--Hb_006198_080 Hb_002477_330 Hb_002477_330 Hb_000700_110--Hb_002477_330 Hb_006198_080--Hb_003092_030 Hb_037887_010 Hb_037887_010 Hb_006198_080--Hb_037887_010 Hb_000107_310 Hb_000107_310 Hb_006198_080--Hb_000107_310 Hb_021238_050 Hb_021238_050 Hb_006198_080--Hb_021238_050 Hb_003092_030--Hb_021238_050 Hb_003092_030--Hb_037887_010 Hb_000898_050 Hb_000898_050 Hb_003092_030--Hb_000898_050 Hb_006429_010 Hb_006429_010 Hb_003092_030--Hb_006429_010 Hb_003847_080 Hb_003847_080 Hb_012305_050--Hb_003847_080 Hb_004128_190 Hb_004128_190 Hb_012305_050--Hb_004128_190 Hb_022250_130 Hb_022250_130 Hb_012305_050--Hb_022250_130 Hb_000245_130 Hb_000245_130 Hb_012305_050--Hb_000245_130 Hb_185830_020 Hb_185830_020 Hb_012305_050--Hb_185830_020 Hb_000087_020 Hb_000087_020 Hb_000024_080--Hb_000087_020 Hb_004032_100 Hb_004032_100 Hb_000024_080--Hb_004032_100 Hb_010180_020 Hb_010180_020 Hb_000024_080--Hb_010180_020 Hb_000676_290 Hb_000676_290 Hb_000024_080--Hb_000676_290 Hb_000024_080--Hb_004128_190 Hb_005398_030 Hb_005398_030 Hb_000024_080--Hb_005398_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.9104 24.9492 11.0247 44.6755 32.6594 109.868
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
69.6477 64.7461 73.6765 29.8748 17.4233

CAGE analysis