Hb_000347_230

Information

Type -
Description -
Location Contig347: 245360-251296
Sequence    

Annotation

kegg
ID rcu:RCOM_0391810
description inter-alpha-trypsin inhibitor heavy chain, putative
nr
ID XP_002532724.1
description inter-alpha-trypsin inhibitor heavy chain, putative [Ricinus communis]
swissprot
ID O02668
description Inter-alpha-trypsin inhibitor heavy chain H2 OS=Sus scrofa GN=ITIH2 PE=2 SV=1
trembl
ID B9T3A5
description Inter-alpha-trypsin inhibitor heavy chain, putative OS=Ricinus communis GN=RCOM_0391810 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_230 0.0 - - inter-alpha-trypsin inhibitor heavy chain, putative [Ricinus communis]
2 Hb_018133_110 0.0961685454 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
3 Hb_006618_080 0.0980583886 - - PREDICTED: non-specific lipid-transfer protein [Jatropha curcas]
4 Hb_001623_400 0.1110108217 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000032_560 0.1235249467 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
6 Hb_098030_010 0.1237851387 - - hypothetical protein JCGZ_06251 [Jatropha curcas]
7 Hb_003734_120 0.130141369 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
8 Hb_002597_010 0.1302201907 - - PREDICTED: putative disease resistance protein RGA1 [Malus domestica]
9 Hb_003768_100 0.131521023 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
10 Hb_118707_020 0.1328572546 - - conserved hypothetical protein [Ricinus communis]
11 Hb_018591_010 0.1348192327 - - kinase, putative [Ricinus communis]
12 Hb_002301_420 0.1348669534 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
13 Hb_002042_200 0.1348850451 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
14 Hb_008418_010 0.1355157371 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
15 Hb_006637_040 0.1359196012 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
16 Hb_164283_010 0.136931595 - - hypothetical protein RCOM_0725500 [Ricinus communis]
17 Hb_007313_010 0.1381109814 - - hypothetical protein JCGZ_23398 [Jatropha curcas]
18 Hb_000380_210 0.1430073306 - - Cyclic nucleotide-gated channel 15 [Theobroma cacao]
19 Hb_002749_070 0.1433237742 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]
20 Hb_000005_230 0.1449995017 - - hypothetical protein POPTR_0009s01160g [Populus trichocarpa]

Gene co-expression network

sample Hb_000347_230 Hb_000347_230 Hb_018133_110 Hb_018133_110 Hb_000347_230--Hb_018133_110 Hb_006618_080 Hb_006618_080 Hb_000347_230--Hb_006618_080 Hb_001623_400 Hb_001623_400 Hb_000347_230--Hb_001623_400 Hb_000032_560 Hb_000032_560 Hb_000347_230--Hb_000032_560 Hb_098030_010 Hb_098030_010 Hb_000347_230--Hb_098030_010 Hb_003734_120 Hb_003734_120 Hb_000347_230--Hb_003734_120 Hb_018133_110--Hb_000032_560 Hb_002042_200 Hb_002042_200 Hb_018133_110--Hb_002042_200 Hb_000580_070 Hb_000580_070 Hb_018133_110--Hb_000580_070 Hb_002301_420 Hb_002301_420 Hb_018133_110--Hb_002301_420 Hb_018133_110--Hb_003734_120 Hb_000005_230 Hb_000005_230 Hb_006618_080--Hb_000005_230 Hb_007313_010 Hb_007313_010 Hb_006618_080--Hb_007313_010 Hb_000723_240 Hb_000723_240 Hb_006618_080--Hb_000723_240 Hb_000589_100 Hb_000589_100 Hb_006618_080--Hb_000589_100 Hb_006618_080--Hb_003734_120 Hb_001623_400--Hb_002042_200 Hb_003064_010 Hb_003064_010 Hb_001623_400--Hb_003064_010 Hb_004021_100 Hb_004021_100 Hb_001623_400--Hb_004021_100 Hb_001623_400--Hb_003734_120 Hb_017491_040 Hb_017491_040 Hb_001623_400--Hb_017491_040 Hb_000032_560--Hb_000580_070 Hb_118707_020 Hb_118707_020 Hb_000032_560--Hb_118707_020 Hb_002597_010 Hb_002597_010 Hb_000032_560--Hb_002597_010 Hb_135811_040 Hb_135811_040 Hb_000032_560--Hb_135811_040 Hb_000276_030 Hb_000276_030 Hb_000032_560--Hb_000276_030 Hb_012368_080 Hb_012368_080 Hb_098030_010--Hb_012368_080 Hb_002809_020 Hb_002809_020 Hb_098030_010--Hb_002809_020 Hb_008418_010 Hb_008418_010 Hb_098030_010--Hb_008418_010 Hb_006637_040 Hb_006637_040 Hb_098030_010--Hb_006637_040 Hb_018591_010 Hb_018591_010 Hb_098030_010--Hb_018591_010 Hb_003768_100 Hb_003768_100 Hb_098030_010--Hb_003768_100 Hb_003734_120--Hb_000276_030 Hb_003787_060 Hb_003787_060 Hb_003734_120--Hb_003787_060 Hb_188923_010 Hb_188923_010 Hb_003734_120--Hb_188923_010 Hb_003734_120--Hb_007313_010 Hb_003734_120--Hb_002042_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.064085 0.388897 0.57096 1.35717 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0153123 0.0291344 3.38918 0.129917

CAGE analysis