Hb_000347_280

Information

Type -
Description -
Location Contig347: 295260-302573
Sequence    

Annotation

kegg
ID pop:POPTR_0003s06570g
description POPTRDRAFT_853157; aldehyde dehydrogenase family 7 member a1 turgor responsive family protein
nr
ID XP_011036450.1
description PREDICTED: aldehyde dehydrogenase family 7 member B4-like [Populus euphratica]
swissprot
ID Q9SYG7
description Aldehyde dehydrogenase family 7 member B4 OS=Arabidopsis thaliana GN=ALDH7B4 PE=2 SV=3
trembl
ID B9GVZ7
description Aldehyde dehydrogenase family 7 member a1 turgor responsive family protein OS=Populus trichocarpa GN=POPTR_0003s06570g PE=3 SV=2
Gene Ontology
ID GO:0005829
description aldehyde dehydrogenase family 7 member b4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36221: 295314-302557
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_280 0.0 - - PREDICTED: aldehyde dehydrogenase family 7 member B4-like [Populus euphratica]
2 Hb_000789_080 0.0749919978 - - PREDICTED: arginine--tRNA ligase, cytoplasmic-like isoform X1 [Jatropha curcas]
3 Hb_007632_020 0.0821216656 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
4 Hb_007590_080 0.0859664786 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
5 Hb_026099_010 0.0873855672 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
6 Hb_004586_180 0.0909495831 - - hypothetical protein JCGZ_15866 [Jatropha curcas]
7 Hb_164010_060 0.0914938534 - - PREDICTED: uncharacterized protein LOC105633115 [Jatropha curcas]
8 Hb_003747_010 0.0922655754 - - hypothetical protein JCGZ_24080 [Jatropha curcas]
9 Hb_176152_010 0.0929989464 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
10 Hb_002044_060 0.0939779288 - - elongation factor ts, putative [Ricinus communis]
11 Hb_000343_230 0.0979363012 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
12 Hb_011609_080 0.1004327743 - - uv excision repair protein rad23, putative [Ricinus communis]
13 Hb_003299_070 0.1007990196 - - AMP deaminase [Theobroma cacao]
14 Hb_002675_060 0.1008488379 - - PREDICTED: uncharacterized protein LOC105634954 isoform X2 [Jatropha curcas]
15 Hb_007336_020 0.1010426549 - - Mannose-P-dolichol utilization defect 1 protein, putative [Ricinus communis]
16 Hb_003020_110 0.1026178974 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
17 Hb_001221_040 0.1033940878 - - PREDICTED: nucleolar protein 56-like [Jatropha curcas]
18 Hb_006663_100 0.1040635241 - - hypothetical protein JCGZ_06980 [Jatropha curcas]
19 Hb_021409_170 0.1050037913 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
20 Hb_004108_140 0.1051695255 - - PREDICTED: HUA2-like protein 3 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000347_280 Hb_000347_280 Hb_000789_080 Hb_000789_080 Hb_000347_280--Hb_000789_080 Hb_007632_020 Hb_007632_020 Hb_000347_280--Hb_007632_020 Hb_007590_080 Hb_007590_080 Hb_000347_280--Hb_007590_080 Hb_026099_010 Hb_026099_010 Hb_000347_280--Hb_026099_010 Hb_004586_180 Hb_004586_180 Hb_000347_280--Hb_004586_180 Hb_164010_060 Hb_164010_060 Hb_000347_280--Hb_164010_060 Hb_000531_090 Hb_000531_090 Hb_000789_080--Hb_000531_090 Hb_002893_150 Hb_002893_150 Hb_000789_080--Hb_002893_150 Hb_000335_010 Hb_000335_010 Hb_000789_080--Hb_000335_010 Hb_000789_080--Hb_026099_010 Hb_002400_180 Hb_002400_180 Hb_000789_080--Hb_002400_180 Hb_002044_060 Hb_002044_060 Hb_000789_080--Hb_002044_060 Hb_011609_080 Hb_011609_080 Hb_007632_020--Hb_011609_080 Hb_007632_020--Hb_007590_080 Hb_031042_070 Hb_031042_070 Hb_007632_020--Hb_031042_070 Hb_007632_020--Hb_026099_010 Hb_010931_080 Hb_010931_080 Hb_007632_020--Hb_010931_080 Hb_004370_030 Hb_004370_030 Hb_007632_020--Hb_004370_030 Hb_007336_020 Hb_007336_020 Hb_007590_080--Hb_007336_020 Hb_002007_350 Hb_002007_350 Hb_007590_080--Hb_002007_350 Hb_007894_140 Hb_007894_140 Hb_007590_080--Hb_007894_140 Hb_008253_010 Hb_008253_010 Hb_007590_080--Hb_008253_010 Hb_000100_070 Hb_000100_070 Hb_007590_080--Hb_000100_070 Hb_000803_300 Hb_000803_300 Hb_007590_080--Hb_000803_300 Hb_004108_140 Hb_004108_140 Hb_026099_010--Hb_004108_140 Hb_001221_040 Hb_001221_040 Hb_026099_010--Hb_001221_040 Hb_026099_010--Hb_002044_060 Hb_026099_010--Hb_004370_030 Hb_000046_440 Hb_000046_440 Hb_026099_010--Hb_000046_440 Hb_004586_180--Hb_164010_060 Hb_004586_180--Hb_004108_140 Hb_003747_010 Hb_003747_010 Hb_004586_180--Hb_003747_010 Hb_004586_180--Hb_026099_010 Hb_106371_010 Hb_106371_010 Hb_004586_180--Hb_106371_010 Hb_185679_010 Hb_185679_010 Hb_004586_180--Hb_185679_010 Hb_003020_110 Hb_003020_110 Hb_164010_060--Hb_003020_110 Hb_006586_050 Hb_006586_050 Hb_164010_060--Hb_006586_050 Hb_164010_060--Hb_007590_080 Hb_164010_060--Hb_007632_020 Hb_063716_080 Hb_063716_080 Hb_164010_060--Hb_063716_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
73.3712 26.7935 16.8688 23.9727 48.7575 57.2613
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.777 18.1568 16.5261 36.1845 12.9577

CAGE analysis