Hb_000347_360

Information

Type -
Description -
Location Contig347: 359992-378032
Sequence    

Annotation

kegg
ID pop:POPTR_0001s16780g
description hypothetical protein
nr
ID XP_012068871.1
description PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
swissprot
ID O24371
description Linoleate 13S-lipoxygenase 3-1, chloroplastic OS=Solanum tuberosum GN=LOX3.1 PE=1 SV=1
trembl
ID U5GTE9
description Lipoxygenase OS=Populus trichocarpa GN=POPTR_0001s16780g PE=3 SV=1
Gene Ontology
ID GO:0016702
description linoleate 13s-lipoxygenase 3- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36229: 360122-360391 , PASA_asmbl_36230: 360392-365085
cDNA
(Sanger)
(ID:Location)		 016_E06.ab1: 363235-364312

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_360 0.0 - - PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic [Jatropha curcas]
2 Hb_073870_020 0.0611048067 - - PREDICTED: probable receptor-like protein kinase At1g67000, partial [Jatropha curcas]
3 Hb_048538_010 0.0623933827 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Prunus mume]
4 Hb_000227_410 0.0696443169 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]
5 Hb_002849_030 0.0733870117 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
6 Hb_000322_020 0.0886949271 - - PREDICTED: uncharacterized protein LOC105637914 [Jatropha curcas]
7 Hb_027214_060 0.0899367113 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
8 Hb_009189_010 0.0904571084 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
9 Hb_000904_090 0.0905148718 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
10 Hb_031862_150 0.0926949969 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
11 Hb_004586_120 0.0930555284 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
12 Hb_010417_120 0.0983646313 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004242_160 0.1026273208 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
14 Hb_025477_020 0.1069289058 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF027 [Jatropha curcas]
15 Hb_001477_080 0.1075616126 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
16 Hb_002922_010 0.1083263669 - - heavy-metal-associated domain-containing family protein [Populus trichocarpa]
17 Hb_005618_020 0.1092442694 - - hypothetical protein RCOM_1342750 [Ricinus communis]
18 Hb_001411_150 0.1110728451 - - Dormancy/auxin associated family protein, putative [Theobroma cacao]
19 Hb_000086_600 0.1115663515 - - -
20 Hb_007383_050 0.1155729333 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF061 [Jatropha curcas]

Gene co-expression network

sample Hb_000347_360 Hb_000347_360 Hb_073870_020 Hb_073870_020 Hb_000347_360--Hb_073870_020 Hb_048538_010 Hb_048538_010 Hb_000347_360--Hb_048538_010 Hb_000227_410 Hb_000227_410 Hb_000347_360--Hb_000227_410 Hb_002849_030 Hb_002849_030 Hb_000347_360--Hb_002849_030 Hb_000322_020 Hb_000322_020 Hb_000347_360--Hb_000322_020 Hb_027214_060 Hb_027214_060 Hb_000347_360--Hb_027214_060 Hb_073870_020--Hb_002849_030 Hb_073870_020--Hb_027214_060 Hb_009189_010 Hb_009189_010 Hb_073870_020--Hb_009189_010 Hb_073870_020--Hb_000227_410 Hb_073870_020--Hb_048538_010 Hb_031862_150 Hb_031862_150 Hb_048538_010--Hb_031862_150 Hb_048538_010--Hb_000227_410 Hb_000904_090 Hb_000904_090 Hb_048538_010--Hb_000904_090 Hb_048538_010--Hb_002849_030 Hb_000227_410--Hb_000904_090 Hb_000227_410--Hb_027214_060 Hb_002475_110 Hb_002475_110 Hb_000227_410--Hb_002475_110 Hb_000227_410--Hb_031862_150 Hb_002849_030--Hb_000322_020 Hb_002849_030--Hb_009189_010 Hb_000422_050 Hb_000422_050 Hb_002849_030--Hb_000422_050 Hb_004586_120 Hb_004586_120 Hb_000322_020--Hb_004586_120 Hb_000322_020--Hb_000422_050 Hb_001257_040 Hb_001257_040 Hb_000322_020--Hb_001257_040 Hb_000529_050 Hb_000529_050 Hb_000322_020--Hb_000529_050 Hb_027214_060--Hb_002475_110 Hb_147137_020 Hb_147137_020 Hb_027214_060--Hb_147137_020 Hb_027214_060--Hb_000904_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0133607 166.412 24.4263 26.7885 0.00505604 0.0243099
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0122449 0.0770894 0 1.50838 5.95776

CAGE analysis