Hb_000347_430

Information

Type -
Description -
Location Contig347: 433815-437785
Sequence    

Annotation

kegg
ID rcu:RCOM_0652450
description ubiquitin-protein ligase, putative
nr
ID XP_012068880.1
description PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
swissprot
ID Q6NTT6
description Mitochondrial ubiquitin ligase activator of nfkb 1 OS=Xenopus laevis GN=mul1 PE=2 SV=1
trembl
ID A0A067L9F3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24698 PE=4 SV=1
Gene Ontology
ID GO:0009941
description mitochondrial ubiquitin ligase activator of nfkb 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36243: 433811-437730
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_430 0.0 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
2 Hb_000406_200 0.0549601652 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
3 Hb_000363_310 0.0556367306 - - DNA topoisomerase type I, putative [Ricinus communis]
4 Hb_000138_100 0.0599029202 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
5 Hb_000258_070 0.0618165918 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
6 Hb_003517_040 0.0629776398 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
7 Hb_001021_150 0.0630992113 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
8 Hb_002263_020 0.0631695248 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
9 Hb_000340_530 0.0632991061 - - hypothetical protein VITISV_016664 [Vitis vinifera]
10 Hb_015807_050 0.0648607631 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
11 Hb_000441_090 0.0648950777 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 2 [Jatropha curcas]
12 Hb_002217_250 0.0661361764 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002849_130 0.0670483341 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
14 Hb_004846_220 0.0673955765 - - PREDICTED: probable protein phosphatase 2C 11 isoform X1 [Jatropha curcas]
15 Hb_001347_060 0.0678971224 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
16 Hb_000976_140 0.0686532504 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
17 Hb_001789_110 0.0697673436 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_000375_390 0.0698599021 - - poly-A binding protein, putative [Ricinus communis]
19 Hb_002989_020 0.070421366 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
20 Hb_183510_020 0.0720416688 - - coated vesicle membrane protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000347_430 Hb_000347_430 Hb_000406_200 Hb_000406_200 Hb_000347_430--Hb_000406_200 Hb_000363_310 Hb_000363_310 Hb_000347_430--Hb_000363_310 Hb_000138_100 Hb_000138_100 Hb_000347_430--Hb_000138_100 Hb_000258_070 Hb_000258_070 Hb_000347_430--Hb_000258_070 Hb_003517_040 Hb_003517_040 Hb_000347_430--Hb_003517_040 Hb_001021_150 Hb_001021_150 Hb_000347_430--Hb_001021_150 Hb_000406_200--Hb_000138_100 Hb_001862_130 Hb_001862_130 Hb_000406_200--Hb_001862_130 Hb_004109_080 Hb_004109_080 Hb_000406_200--Hb_004109_080 Hb_188281_040 Hb_188281_040 Hb_000406_200--Hb_188281_040 Hb_000340_530 Hb_000340_530 Hb_000406_200--Hb_000340_530 Hb_001377_190 Hb_001377_190 Hb_000363_310--Hb_001377_190 Hb_000773_040 Hb_000773_040 Hb_000363_310--Hb_000773_040 Hb_000111_170 Hb_000111_170 Hb_000363_310--Hb_000111_170 Hb_007765_100 Hb_007765_100 Hb_000363_310--Hb_007765_100 Hb_000749_010 Hb_000749_010 Hb_000363_310--Hb_000749_010 Hb_004846_220 Hb_004846_220 Hb_000138_100--Hb_004846_220 Hb_002263_020 Hb_002263_020 Hb_000138_100--Hb_002263_020 Hb_004254_090 Hb_004254_090 Hb_000138_100--Hb_004254_090 Hb_000053_040 Hb_000053_040 Hb_000138_100--Hb_000053_040 Hb_000138_100--Hb_003517_040 Hb_000441_090 Hb_000441_090 Hb_000258_070--Hb_000441_090 Hb_015807_050 Hb_015807_050 Hb_000258_070--Hb_015807_050 Hb_002849_130 Hb_002849_130 Hb_000258_070--Hb_002849_130 Hb_000258_070--Hb_000340_530 Hb_000313_220 Hb_000313_220 Hb_000258_070--Hb_000313_220 Hb_000976_140 Hb_000976_140 Hb_003517_040--Hb_000976_140 Hb_001789_110 Hb_001789_110 Hb_003517_040--Hb_001789_110 Hb_003734_010 Hb_003734_010 Hb_003517_040--Hb_003734_010 Hb_003517_040--Hb_000441_090 Hb_003517_040--Hb_002263_020 Hb_002592_060 Hb_002592_060 Hb_001021_150--Hb_002592_060 Hb_008847_030 Hb_008847_030 Hb_001021_150--Hb_008847_030 Hb_001946_400 Hb_001946_400 Hb_001021_150--Hb_001946_400 Hb_000035_470 Hb_000035_470 Hb_001021_150--Hb_000035_470 Hb_006831_140 Hb_006831_140 Hb_001021_150--Hb_006831_140 Hb_000905_110 Hb_000905_110 Hb_001021_150--Hb_000905_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.11735 8.12658 9.72062 10.6697 10.3698 7.91074
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.39826 8.96655 7.27396 9.9813 12.9677

CAGE analysis