Hb_000347_440

Information

Type transcription factor
Description TF Family: GRAS
Location Contig347: 438409-440037
Sequence    

Annotation

kegg
ID rcu:RCOM_0652460
description Nodulation signaling pathway 1 protein, putative
nr
ID XP_012069237.1
description PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
swissprot
ID Q4VYC8
description Nodulation-signaling pathway 1 protein OS=Medicago truncatula GN=NSP1 PE=1 SV=1
trembl
ID A0A067L8A6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24699 PE=4 SV=1
Gene Ontology
ID GO:0003700
description nodulation-signaling pathway 1 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36245: 439818-440221
cDNA
(Sanger)
(ID:Location)		 023_F16.ab1: 438801-439557

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_440 0.0 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
2 Hb_006913_010 0.0725249578 - - PREDICTED: uncharacterized protein LOC105649144 [Jatropha curcas]
3 Hb_000140_480 0.0917811756 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
4 Hb_004109_310 0.1003929825 - - PREDICTED: uncharacterized protein LOC105646857 [Jatropha curcas]
5 Hb_000023_280 0.1071747063 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
6 Hb_000252_200 0.1082768583 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000676_190 0.1097408422 - - hypothetical protein JCGZ_08279 [Jatropha curcas]
8 Hb_001018_050 0.1104841851 - - PREDICTED: aspartate aminotransferase, cytoplasmic [Jatropha curcas]
9 Hb_000116_410 0.1151455646 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
10 Hb_010142_030 0.11853743 - - PREDICTED: isoamylase 3, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_000200_120 0.1187122683 - - PREDICTED: probable fructose-bisphosphate aldolase 3, chloroplastic [Jatropha curcas]
12 Hb_001178_070 0.118920136 - - PREDICTED: BTB/POZ domain-containing protein FBL11 [Jatropha curcas]
13 Hb_002400_410 0.118965177 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]
14 Hb_003813_050 0.1210600168 - - PREDICTED: tRNA-specific adenosine deaminase 2-like isoform X1 [Jatropha curcas]
15 Hb_002889_030 0.1215762166 - - PREDICTED: uncharacterized protein At3g49140 [Jatropha curcas]
16 Hb_001215_040 0.1218331709 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003294_070 0.125485268 - - hypothetical protein RCOM_1714550 [Ricinus communis]
18 Hb_011671_180 0.1262012912 - - PREDICTED: probable quinone oxidoreductase [Jatropha curcas]
19 Hb_000152_660 0.1266587108 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
20 Hb_000181_400 0.1282753756 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000347_440 Hb_000347_440 Hb_006913_010 Hb_006913_010 Hb_000347_440--Hb_006913_010 Hb_000140_480 Hb_000140_480 Hb_000347_440--Hb_000140_480 Hb_004109_310 Hb_004109_310 Hb_000347_440--Hb_004109_310 Hb_000023_280 Hb_000023_280 Hb_000347_440--Hb_000023_280 Hb_000252_200 Hb_000252_200 Hb_000347_440--Hb_000252_200 Hb_000676_190 Hb_000676_190 Hb_000347_440--Hb_000676_190 Hb_006913_010--Hb_004109_310 Hb_073973_100 Hb_073973_100 Hb_006913_010--Hb_073973_100 Hb_011671_180 Hb_011671_180 Hb_006913_010--Hb_011671_180 Hb_007017_030 Hb_007017_030 Hb_006913_010--Hb_007017_030 Hb_006913_010--Hb_000252_200 Hb_001427_070 Hb_001427_070 Hb_000140_480--Hb_001427_070 Hb_000152_660 Hb_000152_660 Hb_000140_480--Hb_000152_660 Hb_000739_100 Hb_000739_100 Hb_000140_480--Hb_000739_100 Hb_001761_130 Hb_001761_130 Hb_000140_480--Hb_001761_130 Hb_000856_310 Hb_000856_310 Hb_000140_480--Hb_000856_310 Hb_004109_310--Hb_007017_030 Hb_001571_050 Hb_001571_050 Hb_004109_310--Hb_001571_050 Hb_002481_080 Hb_002481_080 Hb_004109_310--Hb_002481_080 Hb_004109_310--Hb_073973_100 Hb_000665_060 Hb_000665_060 Hb_004109_310--Hb_000665_060 Hb_010142_030 Hb_010142_030 Hb_000023_280--Hb_010142_030 Hb_003761_010 Hb_003761_010 Hb_000023_280--Hb_003761_010 Hb_004143_040 Hb_004143_040 Hb_000023_280--Hb_004143_040 Hb_000645_090 Hb_000645_090 Hb_000023_280--Hb_000645_090 Hb_001215_040 Hb_001215_040 Hb_000023_280--Hb_001215_040 Hb_000116_410 Hb_000116_410 Hb_000023_280--Hb_000116_410 Hb_000260_270 Hb_000260_270 Hb_000252_200--Hb_000260_270 Hb_004837_130 Hb_004837_130 Hb_000252_200--Hb_004837_130 Hb_000252_200--Hb_011671_180 Hb_000252_200--Hb_000023_280 Hb_000866_170 Hb_000866_170 Hb_000252_200--Hb_000866_170 Hb_004994_220 Hb_004994_220 Hb_000252_200--Hb_004994_220 Hb_001018_050 Hb_001018_050 Hb_000676_190--Hb_001018_050 Hb_000676_190--Hb_000140_480 Hb_000676_190--Hb_000152_660 Hb_000676_190--Hb_006913_010 Hb_003044_030 Hb_003044_030 Hb_000676_190--Hb_003044_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.03965 2.18073 0.735431 2.82745 2.14542 2.66226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.75632 3.24166 2.27499 5.50004 1.07926

CAGE analysis