Hb_000347_500

Information

Type transcription factor
Description TF Family: GRF
Location Contig347: 464138-467360
Sequence    

Annotation

kegg
ID rcu:RCOM_0652480
description hypothetical protein
nr
ID XP_002521329.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8L8A6
description Growth-regulating factor 5 OS=Arabidopsis thaliana GN=GRF5 PE=1 SV=1
trembl
ID B9S5R0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0652480 PE=4 SV=1
Gene Ontology
ID GO:0005634
description growth-regulating factor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_500 0.0 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
2 Hb_000326_030 0.1602332102 - - hypothetical protein PRUPE_ppa013909mg [Prunus persica]
3 Hb_000415_060 0.1767107416 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
4 Hb_006698_050 0.2063524561 - - Beta-glucosidase, putative [Ricinus communis]
5 Hb_000939_010 0.2214821944 - - PREDICTED: transcription factor bHLH113-like [Jatropha curcas]
6 Hb_000270_560 0.2265608697 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
7 Hb_001749_010 0.2304652635 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
8 Hb_000028_160 0.2305466721 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
9 Hb_000061_390 0.2359979917 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
10 Hb_129722_010 0.2491505466 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Jatropha curcas]
11 Hb_148121_080 0.2540162781 transcription factor TF Family: C2H2 PREDICTED: protein SHOOT GRAVITROPISM 5 [Populus euphratica]
12 Hb_000317_330 0.2579018267 - - PREDICTED: RNA-binding protein 38-like [Jatropha curcas]
13 Hb_151628_010 0.2635091712 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_001769_010 0.2650341712 - - conserved hypothetical protein [Ricinus communis]
15 Hb_184212_010 0.2668033762 - - PREDICTED: uncharacterized protein LOC105113658 [Populus euphratica]
16 Hb_000078_180 0.2668360599 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
17 Hb_087762_010 0.2685083777 - - thioredoxin-like family protein [Hevea brasiliensis]
18 Hb_000392_100 0.2712199746 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
19 Hb_063804_010 0.2723181835 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
20 Hb_000365_260 0.272648987 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000347_500 Hb_000347_500 Hb_000326_030 Hb_000326_030 Hb_000347_500--Hb_000326_030 Hb_000415_060 Hb_000415_060 Hb_000347_500--Hb_000415_060 Hb_006698_050 Hb_006698_050 Hb_000347_500--Hb_006698_050 Hb_000939_010 Hb_000939_010 Hb_000347_500--Hb_000939_010 Hb_000270_560 Hb_000270_560 Hb_000347_500--Hb_000270_560 Hb_001749_010 Hb_001749_010 Hb_000347_500--Hb_001749_010 Hb_000326_030--Hb_000415_060 Hb_000326_030--Hb_001749_010 Hb_001606_080 Hb_001606_080 Hb_000326_030--Hb_001606_080 Hb_151628_010 Hb_151628_010 Hb_000326_030--Hb_151628_010 Hb_129722_010 Hb_129722_010 Hb_000326_030--Hb_129722_010 Hb_000028_160 Hb_000028_160 Hb_000415_060--Hb_000028_160 Hb_152079_010 Hb_152079_010 Hb_000415_060--Hb_152079_010 Hb_011030_010 Hb_011030_010 Hb_000415_060--Hb_011030_010 Hb_046931_010 Hb_046931_010 Hb_000415_060--Hb_046931_010 Hb_021420_010 Hb_021420_010 Hb_000415_060--Hb_021420_010 Hb_098546_010 Hb_098546_010 Hb_006698_050--Hb_098546_010 Hb_087762_010 Hb_087762_010 Hb_006698_050--Hb_087762_010 Hb_000243_280 Hb_000243_280 Hb_006698_050--Hb_000243_280 Hb_000078_180 Hb_000078_180 Hb_006698_050--Hb_000078_180 Hb_006698_050--Hb_000326_030 Hb_000939_010--Hb_000415_060 Hb_000061_390 Hb_000061_390 Hb_000939_010--Hb_000061_390 Hb_071869_010 Hb_071869_010 Hb_000939_010--Hb_071869_010 Hb_000445_080 Hb_000445_080 Hb_000939_010--Hb_000445_080 Hb_000768_060 Hb_000768_060 Hb_000939_010--Hb_000768_060 Hb_001769_010 Hb_001769_010 Hb_000270_560--Hb_001769_010 Hb_010128_070 Hb_010128_070 Hb_000270_560--Hb_010128_070 Hb_003106_150 Hb_003106_150 Hb_000270_560--Hb_003106_150 Hb_007680_020 Hb_007680_020 Hb_000270_560--Hb_007680_020 Hb_001049_030 Hb_001049_030 Hb_000270_560--Hb_001049_030 Hb_003411_110 Hb_003411_110 Hb_000270_560--Hb_003411_110 Hb_001749_010--Hb_129722_010 Hb_001749_010--Hb_001606_080 Hb_002735_040 Hb_002735_040 Hb_001749_010--Hb_002735_040 Hb_001749_010--Hb_000415_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.03199 0.685691 0.117287 0.293146 0.011089 1.31542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.215582 0.33923 0.600251 0.202779 0.0891553

CAGE analysis