Hb_000347_510

Information

Type -
Description -
Location Contig347: 471340-471710
Sequence    

Annotation

kegg
ID rcu:RCOM_0652600
description actin binding protein, putative
nr
ID XP_002521331.1
description actin binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S5R2
description Actin binding protein, putative OS=Ricinus communis GN=RCOM_0652600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_510 0.0 - - actin binding protein, putative [Ricinus communis]
2 Hb_000414_030 0.2192629538 - - -
3 Hb_000832_240 0.219735772 - - conserved hypothetical protein [Ricinus communis]
4 Hb_068946_010 0.2222420848 - - hypothetical protein CICLE_v100122621mg, partial [Citrus clementina]
5 Hb_120221_010 0.2297097494 - - -
6 Hb_080147_090 0.2301556269 - - hypothetical protein JCGZ_07271 [Jatropha curcas]
7 Hb_003746_060 0.2331673996 - - PREDICTED: DTW domain-containing protein 2 [Jatropha curcas]
8 Hb_000995_050 0.2331978971 - - 40S ribosomal protein S17C [Hevea brasiliensis]
9 Hb_004586_450 0.2336749608 - - -
10 Hb_171529_010 0.2359605064 - - -
11 Hb_002671_080 0.2373556021 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1 [Jatropha curcas]
12 Hb_001057_050 0.2377362278 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
13 Hb_001488_110 0.241020875 - - -
14 Hb_170305_020 0.241473272 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
15 Hb_000175_400 0.2416161248 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000329_770 0.2426528982 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004117_180 0.2441543198 - - -
18 Hb_006502_080 0.2449150835 - - -
19 Hb_011016_090 0.2456218626 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
20 Hb_002626_020 0.2491513975 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]

Gene co-expression network

sample Hb_000347_510 Hb_000347_510 Hb_000414_030 Hb_000414_030 Hb_000347_510--Hb_000414_030 Hb_000832_240 Hb_000832_240 Hb_000347_510--Hb_000832_240 Hb_068946_010 Hb_068946_010 Hb_000347_510--Hb_068946_010 Hb_120221_010 Hb_120221_010 Hb_000347_510--Hb_120221_010 Hb_080147_090 Hb_080147_090 Hb_000347_510--Hb_080147_090 Hb_003746_060 Hb_003746_060 Hb_000347_510--Hb_003746_060 Hb_000878_130 Hb_000878_130 Hb_000414_030--Hb_000878_130 Hb_032496_020 Hb_032496_020 Hb_000414_030--Hb_032496_020 Hb_001105_190 Hb_001105_190 Hb_000414_030--Hb_001105_190 Hb_001054_130 Hb_001054_130 Hb_000414_030--Hb_001054_130 Hb_000329_770 Hb_000329_770 Hb_000414_030--Hb_000329_770 Hb_015057_010 Hb_015057_010 Hb_000414_030--Hb_015057_010 Hb_168737_010 Hb_168737_010 Hb_000832_240--Hb_168737_010 Hb_000122_030 Hb_000122_030 Hb_000832_240--Hb_000122_030 Hb_121550_010 Hb_121550_010 Hb_000832_240--Hb_121550_010 Hb_001057_050 Hb_001057_050 Hb_000832_240--Hb_001057_050 Hb_000001_040 Hb_000001_040 Hb_000832_240--Hb_000001_040 Hb_005305_060 Hb_005305_060 Hb_000832_240--Hb_005305_060 Hb_027445_060 Hb_027445_060 Hb_068946_010--Hb_027445_060 Hb_001095_060 Hb_001095_060 Hb_068946_010--Hb_001095_060 Hb_001488_110 Hb_001488_110 Hb_068946_010--Hb_001488_110 Hb_004072_010 Hb_004072_010 Hb_068946_010--Hb_004072_010 Hb_004968_060 Hb_004968_060 Hb_068946_010--Hb_004968_060 Hb_005935_010 Hb_005935_010 Hb_068946_010--Hb_005935_010 Hb_000995_050 Hb_000995_050 Hb_120221_010--Hb_000995_050 Hb_011016_090 Hb_011016_090 Hb_120221_010--Hb_011016_090 Hb_002821_010 Hb_002821_010 Hb_120221_010--Hb_002821_010 Hb_002259_030 Hb_002259_030 Hb_120221_010--Hb_002259_030 Hb_000381_080 Hb_000381_080 Hb_120221_010--Hb_000381_080 Hb_001976_050 Hb_001976_050 Hb_120221_010--Hb_001976_050 Hb_005690_020 Hb_005690_020 Hb_080147_090--Hb_005690_020 Hb_000243_010 Hb_000243_010 Hb_080147_090--Hb_000243_010 Hb_000003_350 Hb_000003_350 Hb_080147_090--Hb_000003_350 Hb_048197_010 Hb_048197_010 Hb_080147_090--Hb_048197_010 Hb_005009_020 Hb_005009_020 Hb_080147_090--Hb_005009_020 Hb_075653_020 Hb_075653_020 Hb_080147_090--Hb_075653_020 Hb_000617_320 Hb_000617_320 Hb_003746_060--Hb_000617_320 Hb_000094_020 Hb_000094_020 Hb_003746_060--Hb_000094_020 Hb_000193_350 Hb_000193_350 Hb_003746_060--Hb_000193_350 Hb_029888_020 Hb_029888_020 Hb_003746_060--Hb_029888_020 Hb_011257_010 Hb_011257_010 Hb_003746_060--Hb_011257_010 Hb_003746_060--Hb_000995_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03655 0.331893 0.540421 0 0.269169 4.97258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.35426 2.79879 0.601573 0.874665 0

CAGE analysis