Hb_000347_550

Information

Type transcription factor
Description TF Family: MYB
Location Contig347: 493946-495098
Sequence    

Annotation

kegg
ID tcc:TCM_029121
description Duplicated homeodomain-like superfamily protein, putative
nr
ID XP_007024611.1
description Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
swissprot
ID P10290
description Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1
trembl
ID A0A061GCW5
description Duplicated homeodomain-like superfamily protein, putative OS=Theobroma cacao GN=TCM_029121 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36256: 494750-495086
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_550 0.0 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
2 Hb_004195_240 0.0773318153 - - Peroxidase 72 precursor, putative [Ricinus communis]
3 Hb_000300_450 0.0903909506 - - PREDICTED: caffeic acid 3-O-methyltransferase-like isoform X1 [Citrus sinensis]
4 Hb_148435_010 0.1238898571 - - glutathione s-transferase, putative [Ricinus communis]
5 Hb_003057_080 0.1301252368 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Jatropha curcas]
6 Hb_148914_010 0.1340377318 - - glutathione s-transferase, putative [Ricinus communis]
7 Hb_010407_120 0.1367276137 - - PREDICTED: glutathione transferase GST 23-like [Jatropha curcas]
8 Hb_000466_090 0.1390358254 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]
9 Hb_006620_040 0.139153807 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
10 Hb_173448_010 0.1398172098 - - PREDICTED: galactose oxidase-like [Jatropha curcas]
11 Hb_000076_200 0.1408835674 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000563_610 0.1426419527 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
13 Hb_007532_050 0.1438221636 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
14 Hb_012796_050 0.1459916722 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
15 Hb_000438_190 0.1460128403 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
16 Hb_061195_010 0.1469373685 - - Galactose oxidase precursor, putative [Ricinus communis]
17 Hb_002805_230 0.1487766623 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
18 Hb_003968_020 0.1491200824 - - PREDICTED: limonoid UDP-glucosyltransferase-like [Glycine max]
19 Hb_004774_060 0.1500922056 - - -
20 Hb_004055_180 0.1501353155 - - cell wall invertase [Manihot esculenta]

Gene co-expression network

sample Hb_000347_550 Hb_000347_550 Hb_004195_240 Hb_004195_240 Hb_000347_550--Hb_004195_240 Hb_000300_450 Hb_000300_450 Hb_000347_550--Hb_000300_450 Hb_148435_010 Hb_148435_010 Hb_000347_550--Hb_148435_010 Hb_003057_080 Hb_003057_080 Hb_000347_550--Hb_003057_080 Hb_148914_010 Hb_148914_010 Hb_000347_550--Hb_148914_010 Hb_010407_120 Hb_010407_120 Hb_000347_550--Hb_010407_120 Hb_173448_010 Hb_173448_010 Hb_004195_240--Hb_173448_010 Hb_004195_240--Hb_148435_010 Hb_004774_060 Hb_004774_060 Hb_004195_240--Hb_004774_060 Hb_061195_010 Hb_061195_010 Hb_004195_240--Hb_061195_010 Hb_004195_240--Hb_148914_010 Hb_000300_450--Hb_004195_240 Hb_006620_040 Hb_006620_040 Hb_000300_450--Hb_006620_040 Hb_000683_010 Hb_000683_010 Hb_000300_450--Hb_000683_010 Hb_000466_090 Hb_000466_090 Hb_000300_450--Hb_000466_090 Hb_000135_050 Hb_000135_050 Hb_000300_450--Hb_000135_050 Hb_035583_010 Hb_035583_010 Hb_148435_010--Hb_035583_010 Hb_148435_010--Hb_061195_010 Hb_000748_070 Hb_000748_070 Hb_148435_010--Hb_000748_070 Hb_005000_040 Hb_005000_040 Hb_148435_010--Hb_005000_040 Hb_000045_230 Hb_000045_230 Hb_003057_080--Hb_000045_230 Hb_002311_240 Hb_002311_240 Hb_003057_080--Hb_002311_240 Hb_000019_220 Hb_000019_220 Hb_003057_080--Hb_000019_220 Hb_080225_010 Hb_080225_010 Hb_003057_080--Hb_080225_010 Hb_011283_010 Hb_011283_010 Hb_003057_080--Hb_011283_010 Hb_012796_050 Hb_012796_050 Hb_148914_010--Hb_012796_050 Hb_000438_190 Hb_000438_190 Hb_148914_010--Hb_000438_190 Hb_002232_370 Hb_002232_370 Hb_148914_010--Hb_002232_370 Hb_000245_140 Hb_000245_140 Hb_148914_010--Hb_000245_140 Hb_002965_020 Hb_002965_020 Hb_148914_010--Hb_002965_020 Hb_148914_010--Hb_010407_120 Hb_001544_040 Hb_001544_040 Hb_010407_120--Hb_001544_040 Hb_007532_050 Hb_007532_050 Hb_010407_120--Hb_007532_050 Hb_000933_200 Hb_000933_200 Hb_010407_120--Hb_000933_200 Hb_007527_020 Hb_007527_020 Hb_010407_120--Hb_007527_020 Hb_003253_020 Hb_003253_020 Hb_010407_120--Hb_003253_020 Hb_010407_120--Hb_000438_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.664473 0.659829 1.25801 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.557697 0 16.7075 0.69902

CAGE analysis