Hb_000347_560

Information

Type -
Description -
Location Contig347: 502760-504312
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_560 0.0 - - -
2 Hb_162275_040 0.0781470526 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008484_010 0.0831535041 - - hypothetical protein B456_008G050700 [Gossypium raimondii]
4 Hb_041828_010 0.085901945 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
5 Hb_004701_050 0.0892647425 - - alpha1 family protein [Populus trichocarpa]
6 Hb_002631_140 0.0945958882 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Jatropha curcas]
7 Hb_000069_570 0.0962699287 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
8 Hb_000082_070 0.0982506499 - - PREDICTED: phosphatidylinositol 4-kinase alpha 1 [Jatropha curcas]
9 Hb_006355_020 0.100813797 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
10 Hb_000780_190 0.1041102787 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
11 Hb_004306_030 0.1064972528 - - PREDICTED: GPI transamidase component PIG-S [Jatropha curcas]
12 Hb_001194_020 0.1068740078 - - microtubule associated protein xmap215, putative [Ricinus communis]
13 Hb_000183_050 0.1089996755 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
14 Hb_000960_040 0.1091119419 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Vitis vinifera]
15 Hb_000261_410 0.1119682361 - - PREDICTED: myosin-binding protein 3 [Jatropha curcas]
16 Hb_000035_410 0.1120246299 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
17 Hb_001109_060 0.1126516801 - - amino acid transporter, putative [Ricinus communis]
18 Hb_017966_020 0.1160062455 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03560, mitochondrial [Jatropha curcas]
19 Hb_007994_010 0.1169151763 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
20 Hb_160459_040 0.117014444 - - hypothetical protein JCGZ_01511 [Jatropha curcas]

Gene co-expression network

sample Hb_000347_560 Hb_000347_560 Hb_162275_040 Hb_162275_040 Hb_000347_560--Hb_162275_040 Hb_008484_010 Hb_008484_010 Hb_000347_560--Hb_008484_010 Hb_041828_010 Hb_041828_010 Hb_000347_560--Hb_041828_010 Hb_004701_050 Hb_004701_050 Hb_000347_560--Hb_004701_050 Hb_002631_140 Hb_002631_140 Hb_000347_560--Hb_002631_140 Hb_000069_570 Hb_000069_570 Hb_000347_560--Hb_000069_570 Hb_000086_440 Hb_000086_440 Hb_162275_040--Hb_000086_440 Hb_002539_110 Hb_002539_110 Hb_162275_040--Hb_002539_110 Hb_001109_060 Hb_001109_060 Hb_162275_040--Hb_001109_060 Hb_010272_010 Hb_010272_010 Hb_162275_040--Hb_010272_010 Hb_005227_010 Hb_005227_010 Hb_162275_040--Hb_005227_010 Hb_006355_020 Hb_006355_020 Hb_162275_040--Hb_006355_020 Hb_008484_010--Hb_041828_010 Hb_000004_030 Hb_000004_030 Hb_008484_010--Hb_000004_030 Hb_002400_330 Hb_002400_330 Hb_008484_010--Hb_002400_330 Hb_000345_360 Hb_000345_360 Hb_008484_010--Hb_000345_360 Hb_000284_120 Hb_000284_120 Hb_008484_010--Hb_000284_120 Hb_041828_010--Hb_000004_030 Hb_000780_190 Hb_000780_190 Hb_041828_010--Hb_000780_190 Hb_041828_010--Hb_000345_360 Hb_004223_290 Hb_004223_290 Hb_041828_010--Hb_004223_290 Hb_089140_050 Hb_089140_050 Hb_004701_050--Hb_089140_050 Hb_004701_050--Hb_162275_040 Hb_000261_100 Hb_000261_100 Hb_004701_050--Hb_000261_100 Hb_004701_050--Hb_000780_190 Hb_004701_050--Hb_010272_010 Hb_000035_410 Hb_000035_410 Hb_004701_050--Hb_000035_410 Hb_000082_070 Hb_000082_070 Hb_002631_140--Hb_000082_070 Hb_009771_110 Hb_009771_110 Hb_002631_140--Hb_009771_110 Hb_160459_040 Hb_160459_040 Hb_002631_140--Hb_160459_040 Hb_143489_010 Hb_143489_010 Hb_002631_140--Hb_143489_010 Hb_000261_030 Hb_000261_030 Hb_002631_140--Hb_000261_030 Hb_001789_040 Hb_001789_040 Hb_002631_140--Hb_001789_040 Hb_008014_040 Hb_008014_040 Hb_000069_570--Hb_008014_040 Hb_000022_190 Hb_000022_190 Hb_000069_570--Hb_000022_190 Hb_005048_140 Hb_005048_140 Hb_000069_570--Hb_005048_140 Hb_116420_040 Hb_116420_040 Hb_000069_570--Hb_116420_040 Hb_010315_020 Hb_010315_020 Hb_000069_570--Hb_010315_020 Hb_000069_570--Hb_162275_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.72301 2.57273 2.49467 3.02663 3.17409 4.95764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.04462 1.094 1.11764 2.14137 4.42652

CAGE analysis