Hb_000348_040

Information

Type -
Description -
Location Contig348: 114417-115868
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000348_040 0.0 - - -
2 Hb_006501_030 0.1446334375 - - hypothetical protein POPTR_0006s17720g [Populus trichocarpa]
3 Hb_004297_030 0.1708628343 - - PREDICTED: uncharacterized protein LOC105633198 [Jatropha curcas]
4 Hb_015091_010 0.1717564153 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
5 Hb_063511_010 0.1820369055 - - DNA-directed RNA polymerase II subunit RPB4 [Gossypium arboreum]
6 Hb_088496_010 0.1857647465 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
7 Hb_000048_100 0.1910871305 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001951_280 0.2021831213 - - -
9 Hb_094721_010 0.2129515197 - - PREDICTED: uncharacterized protein LOC104809818, partial [Tarenaya hassleriana]
10 Hb_030765_010 0.2146354802 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]
11 Hb_012324_020 0.2152918974 - - -
12 Hb_007574_060 0.2240668528 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 27-like [Jatropha curcas]
13 Hb_000563_270 0.2347379362 - - -
14 Hb_015401_010 0.2454231349 - - hypothetical protein VITISV_001548 [Vitis vinifera]
15 Hb_005063_070 0.2461442094 - - PREDICTED: PRA1 family protein E [Jatropha curcas]
16 Hb_056768_010 0.2466040949 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Cicer arietinum]
17 Hb_004586_450 0.2526533102 - - -
18 Hb_020247_060 0.2618017492 - - UDP-glucoronosyl/UDP-glucosyl transferase family protein [Populus trichocarpa]
19 Hb_000003_770 0.2631490022 - - -
20 Hb_000562_080 0.267133031 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000348_040 Hb_000348_040 Hb_006501_030 Hb_006501_030 Hb_000348_040--Hb_006501_030 Hb_004297_030 Hb_004297_030 Hb_000348_040--Hb_004297_030 Hb_015091_010 Hb_015091_010 Hb_000348_040--Hb_015091_010 Hb_063511_010 Hb_063511_010 Hb_000348_040--Hb_063511_010 Hb_088496_010 Hb_088496_010 Hb_000348_040--Hb_088496_010 Hb_000048_100 Hb_000048_100 Hb_000348_040--Hb_000048_100 Hb_006501_030--Hb_015091_010 Hb_006501_030--Hb_063511_010 Hb_005946_030 Hb_005946_030 Hb_006501_030--Hb_005946_030 Hb_006501_030--Hb_000048_100 Hb_001951_280 Hb_001951_280 Hb_006501_030--Hb_001951_280 Hb_004297_030--Hb_088496_010 Hb_000003_770 Hb_000003_770 Hb_004297_030--Hb_000003_770 Hb_004297_030--Hb_015091_010 Hb_094721_010 Hb_094721_010 Hb_004297_030--Hb_094721_010 Hb_012324_020 Hb_012324_020 Hb_004297_030--Hb_012324_020 Hb_015091_010--Hb_063511_010 Hb_015091_010--Hb_001951_280 Hb_015091_010--Hb_088496_010 Hb_063511_010--Hb_001951_280 Hb_169488_010 Hb_169488_010 Hb_063511_010--Hb_169488_010 Hb_003702_050 Hb_003702_050 Hb_063511_010--Hb_003702_050 Hb_088496_010--Hb_000003_770 Hb_088496_010--Hb_094721_010 Hb_001379_130 Hb_001379_130 Hb_088496_010--Hb_001379_130 Hb_088496_010--Hb_012324_020 Hb_001257_020 Hb_001257_020 Hb_088496_010--Hb_001257_020 Hb_030765_010 Hb_030765_010 Hb_000048_100--Hb_030765_010 Hb_004586_450 Hb_004586_450 Hb_000048_100--Hb_004586_450 Hb_000562_080 Hb_000562_080 Hb_000048_100--Hb_000562_080 Hb_007574_060 Hb_007574_060 Hb_000048_100--Hb_007574_060 Hb_056768_010 Hb_056768_010 Hb_000048_100--Hb_056768_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.025224 0 0.0779505 0.0204754 0.0962667 2.10908
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.85234 2.32161 0 0 0

CAGE analysis