Hb_000349_060

Information

Type -
Description -
Location Contig349: 27878-29711
Sequence    

Annotation

kegg
ID brp:103864746
description calmodulin-7-like
nr
ID XP_003632230.1
description PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
swissprot
ID P62201
description Calmodulin OS=Lilium longiflorum PE=2 SV=2
trembl
ID G3MHB1
description Putative uncharacterized protein (Fragment) OS=Amblyomma maculatum PE=2 SV=1
Gene Ontology
ID GO:0005829
description calmodulin-7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36301: 27870-29695
cDNA
(Sanger)
(ID:Location)		 016_L10.ab1: 27874-29365 , 030_K24.ab1: 27879-29466 , 037_O19.ab1: 27874-29511 , 048_A13.ab1: 27870-29502 , 051_I14.ab1: 27876-29444

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000349_060 0.0 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
2 Hb_004944_010 0.0489447037 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
3 Hb_000780_060 0.0634431612 - - hypothetical protein CICLE_v10017178mg [Citrus clementina]
4 Hb_105386_010 0.06706687 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
5 Hb_023001_050 0.071201328 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
6 Hb_001358_030 0.071443453 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
7 Hb_000465_430 0.0750385624 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]
8 Hb_000457_110 0.0756665187 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
9 Hb_003038_030 0.0768829969 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
10 Hb_141131_010 0.0771782514 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
11 Hb_001047_100 0.0772033315 - - 40S ribosomal protein S18, putative [Ricinus communis]
12 Hb_012008_020 0.080101532 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
13 Hb_000690_080 0.0835764385 transcription factor TF Family: HB -
14 Hb_004204_200 0.0836358932 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
15 Hb_004440_050 0.0843311752 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
16 Hb_003746_040 0.0847119183 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
17 Hb_001369_660 0.0849034673 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
18 Hb_000099_240 0.0852626125 - - 60S ribosomal protein L7a, putative [Ricinus communis]
19 Hb_011828_050 0.0868439627 - - 40S ribosomal protein S23, putative [Ricinus communis]
20 Hb_009767_120 0.0868609478 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000349_060 Hb_000349_060 Hb_004944_010 Hb_004944_010 Hb_000349_060--Hb_004944_010 Hb_000780_060 Hb_000780_060 Hb_000349_060--Hb_000780_060 Hb_105386_010 Hb_105386_010 Hb_000349_060--Hb_105386_010 Hb_023001_050 Hb_023001_050 Hb_000349_060--Hb_023001_050 Hb_001358_030 Hb_001358_030 Hb_000349_060--Hb_001358_030 Hb_000465_430 Hb_000465_430 Hb_000349_060--Hb_000465_430 Hb_000690_080 Hb_000690_080 Hb_004944_010--Hb_000690_080 Hb_141131_010 Hb_141131_010 Hb_004944_010--Hb_141131_010 Hb_000457_110 Hb_000457_110 Hb_004944_010--Hb_000457_110 Hb_003874_020 Hb_003874_020 Hb_004944_010--Hb_003874_020 Hb_003038_030 Hb_003038_030 Hb_004944_010--Hb_003038_030 Hb_002983_010 Hb_002983_010 Hb_000780_060--Hb_002983_010 Hb_000780_060--Hb_001358_030 Hb_001301_160 Hb_001301_160 Hb_000780_060--Hb_001301_160 Hb_000780_060--Hb_003038_030 Hb_000060_040 Hb_000060_040 Hb_000780_060--Hb_000060_040 Hb_001047_100 Hb_001047_100 Hb_105386_010--Hb_001047_100 Hb_105386_010--Hb_001358_030 Hb_000189_340 Hb_000189_340 Hb_105386_010--Hb_000189_340 Hb_105386_010--Hb_023001_050 Hb_003746_040 Hb_003746_040 Hb_105386_010--Hb_003746_040 Hb_003502_080 Hb_003502_080 Hb_023001_050--Hb_003502_080 Hb_023001_050--Hb_000465_430 Hb_005016_170 Hb_005016_170 Hb_023001_050--Hb_005016_170 Hb_012092_010 Hb_012092_010 Hb_023001_050--Hb_012092_010 Hb_000640_240 Hb_000640_240 Hb_001358_030--Hb_000640_240 Hb_012008_020 Hb_012008_020 Hb_001358_030--Hb_012008_020 Hb_096563_010 Hb_096563_010 Hb_001358_030--Hb_096563_010 Hb_002660_080 Hb_002660_080 Hb_001358_030--Hb_002660_080 Hb_001358_030--Hb_000189_340 Hb_000465_430--Hb_012092_010 Hb_002495_040 Hb_002495_040 Hb_000465_430--Hb_002495_040 Hb_000465_430--Hb_003502_080 Hb_033843_010 Hb_033843_010 Hb_000465_430--Hb_033843_010 Hb_000465_430--Hb_005016_170 Hb_000092_100 Hb_000092_100 Hb_000465_430--Hb_000092_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
412.733 183.722 175.787 214.192 373.272 614.25
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
339.711 459.153 215.433 119.482 68.956

CAGE analysis