Hb_000349_270

Information

Type -
Description -
Location Contig349: 269732-273104
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08230g
description POPTRDRAFT_640598; hypothetical protein
nr
ID XP_012087067.1
description PREDICTED: uncharacterized protein ycf49 isoform X1 [Jatropha curcas]
swissprot
ID Q55720
description Ycf49-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0608 PE=3 SV=1
trembl
ID A0A067JRV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20729 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36326: 269807-273216 , PASA_asmbl_36327: 269796-273238
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000349_270 0.0 - - PREDICTED: uncharacterized protein ycf49 isoform X1 [Jatropha curcas]
2 Hb_004242_110 0.0857855289 - - PREDICTED: uncharacterized protein LOC105632860 [Jatropha curcas]
3 Hb_000796_160 0.1035921132 - - PREDICTED: nifU-like protein 1, chloroplastic [Jatropha curcas]
4 Hb_005235_070 0.1105185634 - - PREDICTED: plastid lipid-associated protein 3, chloroplastic [Jatropha curcas]
5 Hb_009847_030 0.1105497546 - - zinc finger family protein [Populus trichocarpa]
6 Hb_001935_100 0.1148984791 - - structural molecule, putative [Ricinus communis]
7 Hb_001410_070 0.1161665581 - - hypothetical protein JCGZ_20421 [Jatropha curcas]
8 Hb_000311_120 0.1177909868 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
9 Hb_003462_180 0.11914913 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
10 Hb_000555_020 0.1208638977 - - APO protein 2, chloroplast precursor, putative [Ricinus communis]
11 Hb_001430_020 0.1225714805 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
12 Hb_001587_180 0.1253670077 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
13 Hb_019053_060 0.1265898202 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
14 Hb_006907_060 0.1293849152 - - Alternative oxidase 4, chloroplast precursor, putative [Ricinus communis]
15 Hb_076778_010 0.1297737895 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
16 Hb_001946_160 0.1304063024 - - putative chaperon P13.9 [Castanea sativa]
17 Hb_102948_010 0.130974715 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
18 Hb_006787_090 0.1311000401 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
19 Hb_000107_340 0.1319730687 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105637652 [Jatropha curcas]
20 Hb_003883_010 0.1328210955 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]

Gene co-expression network

sample Hb_000349_270 Hb_000349_270 Hb_004242_110 Hb_004242_110 Hb_000349_270--Hb_004242_110 Hb_000796_160 Hb_000796_160 Hb_000349_270--Hb_000796_160 Hb_005235_070 Hb_005235_070 Hb_000349_270--Hb_005235_070 Hb_009847_030 Hb_009847_030 Hb_000349_270--Hb_009847_030 Hb_001935_100 Hb_001935_100 Hb_000349_270--Hb_001935_100 Hb_001410_070 Hb_001410_070 Hb_000349_270--Hb_001410_070 Hb_166876_010 Hb_166876_010 Hb_004242_110--Hb_166876_010 Hb_001675_140 Hb_001675_140 Hb_004242_110--Hb_001675_140 Hb_001160_100 Hb_001160_100 Hb_004242_110--Hb_001160_100 Hb_001629_090 Hb_001629_090 Hb_004242_110--Hb_001629_090 Hb_004242_110--Hb_009847_030 Hb_000025_780 Hb_000025_780 Hb_000796_160--Hb_000025_780 Hb_000796_160--Hb_001935_100 Hb_000796_160--Hb_001410_070 Hb_000487_260 Hb_000487_260 Hb_000796_160--Hb_000487_260 Hb_076778_010 Hb_076778_010 Hb_000796_160--Hb_076778_010 Hb_000230_400 Hb_000230_400 Hb_000796_160--Hb_000230_400 Hb_000555_020 Hb_000555_020 Hb_005235_070--Hb_000555_020 Hb_003883_010 Hb_003883_010 Hb_005235_070--Hb_003883_010 Hb_102948_010 Hb_102948_010 Hb_005235_070--Hb_102948_010 Hb_000107_340 Hb_000107_340 Hb_005235_070--Hb_000107_340 Hb_002218_020 Hb_002218_020 Hb_005235_070--Hb_002218_020 Hb_002107_050 Hb_002107_050 Hb_005235_070--Hb_002107_050 Hb_000003_680 Hb_000003_680 Hb_009847_030--Hb_000003_680 Hb_009847_030--Hb_102948_010 Hb_000291_180 Hb_000291_180 Hb_009847_030--Hb_000291_180 Hb_009847_030--Hb_005235_070 Hb_001430_020 Hb_001430_020 Hb_009847_030--Hb_001430_020 Hb_009847_030--Hb_002218_020 Hb_000051_060 Hb_000051_060 Hb_001935_100--Hb_000051_060 Hb_000227_170 Hb_000227_170 Hb_001935_100--Hb_000227_170 Hb_005539_010 Hb_005539_010 Hb_001935_100--Hb_005539_010 Hb_001935_100--Hb_001410_070 Hb_005946_040 Hb_005946_040 Hb_001935_100--Hb_005946_040 Hb_006538_120 Hb_006538_120 Hb_001410_070--Hb_006538_120 Hb_001410_070--Hb_000025_780 Hb_009775_010 Hb_009775_010 Hb_001410_070--Hb_009775_010 Hb_001410_070--Hb_005539_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.39607 9.56618 20.7205 8.17642 5.54358 4.32713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.66185 11.6656 3.7602 2.57642 23.245

CAGE analysis