Hb_000349_280

Information

Type -
Description -
Location Contig349: 274547-275028
Sequence    

Annotation

kegg
ID rcu:RCOM_1681400
description hypothetical protein
nr
ID XP_002509639.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RBV5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1681400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000349_280 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006618_100 0.0745228585 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
3 Hb_000422_060 0.0863174009 transcription factor TF Family: OFP hypothetical protein RCOM_1282480 [Ricinus communis]
4 Hb_010217_020 0.0871361163 - - cinnamate 4-hydroxylase [Leucaena leucocephala]
5 Hb_012217_010 0.0946785214 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
6 Hb_032260_040 0.0958399552 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007441_100 0.1029394607 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 12 [Populus euphratica]
8 Hb_000201_050 0.1035956091 - - -
9 Hb_001541_170 0.1052429617 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
10 Hb_000098_230 0.1066865525 - - Potassium channel AKT2/3, putative [Ricinus communis]
11 Hb_003582_030 0.1072102813 - - PREDICTED: serine/threonine-protein kinase BRI1-like 2 [Jatropha curcas]
12 Hb_004757_010 0.1075977022 - - PREDICTED: uncharacterized protein LOC105121200 [Populus euphratica]
13 Hb_003711_050 0.1090470609 - - Isoflavone reductase, putative [Ricinus communis]
14 Hb_002835_120 0.1100372965 - - PREDICTED: uncharacterized protein LOC105640304 [Jatropha curcas]
15 Hb_000438_180 0.1111235882 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
16 Hb_021443_010 0.1138715796 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
17 Hb_103632_010 0.1139190362 - - triacylglycerol lipase, putative [Ricinus communis]
18 Hb_005588_050 0.1153813184 - - conserved hypothetical protein [Ricinus communis]
19 Hb_032299_020 0.1153881708 - - tonoplast intrinsic protein, putative [Ricinus communis]
20 Hb_145975_010 0.1157221918 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_000349_280 Hb_000349_280 Hb_006618_100 Hb_006618_100 Hb_000349_280--Hb_006618_100 Hb_000422_060 Hb_000422_060 Hb_000349_280--Hb_000422_060 Hb_010217_020 Hb_010217_020 Hb_000349_280--Hb_010217_020 Hb_012217_010 Hb_012217_010 Hb_000349_280--Hb_012217_010 Hb_032260_040 Hb_032260_040 Hb_000349_280--Hb_032260_040 Hb_007441_100 Hb_007441_100 Hb_000349_280--Hb_007441_100 Hb_006618_100--Hb_010217_020 Hb_145975_010 Hb_145975_010 Hb_006618_100--Hb_145975_010 Hb_004757_010 Hb_004757_010 Hb_006618_100--Hb_004757_010 Hb_004158_040 Hb_004158_040 Hb_006618_100--Hb_004158_040 Hb_001579_160 Hb_001579_160 Hb_006618_100--Hb_001579_160 Hb_032299_020 Hb_032299_020 Hb_000422_060--Hb_032299_020 Hb_007919_010 Hb_007919_010 Hb_000422_060--Hb_007919_010 Hb_000098_230 Hb_000098_230 Hb_000422_060--Hb_000098_230 Hb_002186_170 Hb_002186_170 Hb_000422_060--Hb_002186_170 Hb_001584_250 Hb_001584_250 Hb_000422_060--Hb_001584_250 Hb_000953_110 Hb_000953_110 Hb_010217_020--Hb_000953_110 Hb_010217_020--Hb_004158_040 Hb_001454_350 Hb_001454_350 Hb_010217_020--Hb_001454_350 Hb_007545_220 Hb_007545_220 Hb_010217_020--Hb_007545_220 Hb_011930_090 Hb_011930_090 Hb_012217_010--Hb_011930_090 Hb_012217_010--Hb_007441_100 Hb_012217_010--Hb_032260_040 Hb_000847_110 Hb_000847_110 Hb_012217_010--Hb_000847_110 Hb_001541_170 Hb_001541_170 Hb_012217_010--Hb_001541_170 Hb_019299_010 Hb_019299_010 Hb_012217_010--Hb_019299_010 Hb_003711_050 Hb_003711_050 Hb_032260_040--Hb_003711_050 Hb_008406_170 Hb_008406_170 Hb_032260_040--Hb_008406_170 Hb_000201_050 Hb_000201_050 Hb_032260_040--Hb_000201_050 Hb_021443_010 Hb_021443_010 Hb_032260_040--Hb_021443_010 Hb_000853_140 Hb_000853_140 Hb_032260_040--Hb_000853_140 Hb_007441_100--Hb_000847_110 Hb_000378_030 Hb_000378_030 Hb_007441_100--Hb_000378_030 Hb_007441_100--Hb_000098_230 Hb_001418_050 Hb_001418_050 Hb_007441_100--Hb_001418_050 Hb_007441_100--Hb_001541_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0927224 10.8862 2.28908 54.3411 0.369531 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.173111 0 1.12497 7.17001

CAGE analysis