Hb_000349_290

Information

Type -
Description -
Location Contig349: 283662-285330
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08210g
description POPTRDRAFT_548563; zinc finger family protein
nr
ID XP_012087070.1
description PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
swissprot
ID Q9SZ69
description Zinc finger A20 and AN1 domain-containing stress-associated protein 7 OS=Arabidopsis thaliana GN=SAP7 PE=1 SV=1
trembl
ID A0A067JZZ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20731 PE=4 SV=1
Gene Ontology
ID GO:0003677
description zinc finger a20 and an1 domain-containing stress-associated protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36328: 283712-285742
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000349_290 0.0 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
2 Hb_001565_080 0.0665035465 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
3 Hb_003185_050 0.0704191992 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
4 Hb_000215_060 0.0730538029 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
5 Hb_000363_480 0.0765275262 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
6 Hb_000905_180 0.0823016983 - - 60S ribosomal protein L31A [Hevea brasiliensis]
7 Hb_011173_050 0.0855755706 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
8 Hb_001638_020 0.0882916946 - - PREDICTED: protein OSB1, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_015807_100 0.089301792 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
10 Hb_032260_030 0.0897455237 - - hypothetical protein POPTR_0001s10500g [Populus trichocarpa]
11 Hb_002374_390 0.0903595415 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
12 Hb_000264_090 0.093371183 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
13 Hb_000881_080 0.094208988 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000331_700 0.095152313 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
15 Hb_001016_090 0.0958235218 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
16 Hb_001248_080 0.0960992202 - - PREDICTED: 40S ribosomal protein S29 [Nelumbo nucifera]
17 Hb_001633_030 0.0963289423 - - -
18 Hb_001998_050 0.0986156125 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
19 Hb_000115_230 0.0990333852 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
20 Hb_005568_120 0.0995047982 - - Prephenate dehydratase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000349_290 Hb_000349_290 Hb_001565_080 Hb_001565_080 Hb_000349_290--Hb_001565_080 Hb_003185_050 Hb_003185_050 Hb_000349_290--Hb_003185_050 Hb_000215_060 Hb_000215_060 Hb_000349_290--Hb_000215_060 Hb_000363_480 Hb_000363_480 Hb_000349_290--Hb_000363_480 Hb_000905_180 Hb_000905_180 Hb_000349_290--Hb_000905_180 Hb_011173_050 Hb_011173_050 Hb_000349_290--Hb_011173_050 Hb_001565_080--Hb_000215_060 Hb_001565_080--Hb_000363_480 Hb_032260_030 Hb_032260_030 Hb_001565_080--Hb_032260_030 Hb_000331_700 Hb_000331_700 Hb_001565_080--Hb_000331_700 Hb_000881_080 Hb_000881_080 Hb_001565_080--Hb_000881_080 Hb_152910_020 Hb_152910_020 Hb_003185_050--Hb_152910_020 Hb_002374_390 Hb_002374_390 Hb_003185_050--Hb_002374_390 Hb_003185_050--Hb_000905_180 Hb_003326_020 Hb_003326_020 Hb_003185_050--Hb_003326_020 Hb_001016_090 Hb_001016_090 Hb_003185_050--Hb_001016_090 Hb_000215_060--Hb_000363_480 Hb_000175_060 Hb_000175_060 Hb_000215_060--Hb_000175_060 Hb_000496_120 Hb_000496_120 Hb_000215_060--Hb_000496_120 Hb_000215_060--Hb_011173_050 Hb_000574_480 Hb_000574_480 Hb_000363_480--Hb_000574_480 Hb_003226_210 Hb_003226_210 Hb_000363_480--Hb_003226_210 Hb_001998_050 Hb_001998_050 Hb_000363_480--Hb_001998_050 Hb_003656_070 Hb_003656_070 Hb_000363_480--Hb_003656_070 Hb_001214_160 Hb_001214_160 Hb_000363_480--Hb_001214_160 Hb_000163_130 Hb_000163_130 Hb_000905_180--Hb_000163_130 Hb_000236_150 Hb_000236_150 Hb_000905_180--Hb_000236_150 Hb_000905_180--Hb_001016_090 Hb_005474_060 Hb_005474_060 Hb_000905_180--Hb_005474_060 Hb_000905_180--Hb_002374_390 Hb_005568_120 Hb_005568_120 Hb_011173_050--Hb_005568_120 Hb_011173_050--Hb_000175_060 Hb_000111_330 Hb_000111_330 Hb_011173_050--Hb_000111_330 Hb_000368_010 Hb_000368_010 Hb_011173_050--Hb_000368_010 Hb_000373_130 Hb_000373_130 Hb_011173_050--Hb_000373_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.8657 54.9332 21.4337 42.0714 34.4068 59.6516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
116.259 227.096 128.649 51.2789 26.0197

CAGE analysis