Hb_000350_050

Information

Type -
Description -
Location Contig350: 31271-32897
Sequence    

Annotation

kegg
ID rcu:RCOM_0496690
description hypothetical protein
nr
ID KDP37632.1
description hypothetical protein JCGZ_07831 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KNB2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07831 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein rga1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36471: 30495-31315
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000350_050 0.0 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
2 Hb_005214_170 0.1368251237 - - PREDICTED: uncharacterized protein LOC105636021 [Jatropha curcas]
3 Hb_000589_170 0.1447955521 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
4 Hb_000331_420 0.1467434003 - - PREDICTED: nucleoside diphosphate kinase 2, chloroplastic [Jatropha curcas]
5 Hb_023091_010 0.1477179042 - - hypothetical protein POPTR_0016s06670g [Populus trichocarpa]
6 Hb_000620_020 0.1499181847 - - PREDICTED: uncharacterized protein LOC105649917 [Jatropha curcas]
7 Hb_000398_170 0.1529421878 - - PREDICTED: tobamovirus multiplication protein 1-like [Jatropha curcas]
8 Hb_001009_140 0.1609227737 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
9 Hb_000189_130 0.163380748 - - PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
10 Hb_001053_060 0.1642216705 - - DHHC-type zinc finger family protein [Theobroma cacao]
11 Hb_006438_020 0.1665109857 - - PREDICTED: lysine--tRNA ligase-like [Populus euphratica]
12 Hb_000246_150 0.1675096195 - - PREDICTED: protein FAM135B [Jatropha curcas]
13 Hb_101334_020 0.1681417957 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
14 Hb_017193_010 0.1686653985 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
15 Hb_000116_250 0.1699171305 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
16 Hb_002534_130 0.1712253202 - - membrane associated ring finger 1,8, putative [Ricinus communis]
17 Hb_000307_070 0.1716959341 - - protein kinase, putative [Ricinus communis]
18 Hb_000331_570 0.1737491012 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Jatropha curcas]
19 Hb_007426_220 0.1744701443 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
20 Hb_000229_050 0.1752861199 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000350_050 Hb_000350_050 Hb_005214_170 Hb_005214_170 Hb_000350_050--Hb_005214_170 Hb_000589_170 Hb_000589_170 Hb_000350_050--Hb_000589_170 Hb_000331_420 Hb_000331_420 Hb_000350_050--Hb_000331_420 Hb_023091_010 Hb_023091_010 Hb_000350_050--Hb_023091_010 Hb_000620_020 Hb_000620_020 Hb_000350_050--Hb_000620_020 Hb_000398_170 Hb_000398_170 Hb_000350_050--Hb_000398_170 Hb_000330_090 Hb_000330_090 Hb_005214_170--Hb_000330_090 Hb_007199_020 Hb_007199_020 Hb_005214_170--Hb_007199_020 Hb_005946_150 Hb_005946_150 Hb_005214_170--Hb_005946_150 Hb_000193_260 Hb_000193_260 Hb_005214_170--Hb_000193_260 Hb_005214_170--Hb_000331_420 Hb_001804_090 Hb_001804_090 Hb_005214_170--Hb_001804_090 Hb_000098_180 Hb_000098_180 Hb_000589_170--Hb_000098_180 Hb_015778_040 Hb_015778_040 Hb_000589_170--Hb_015778_040 Hb_001009_140 Hb_001009_140 Hb_000589_170--Hb_001009_140 Hb_000589_170--Hb_023091_010 Hb_013405_070 Hb_013405_070 Hb_000589_170--Hb_013405_070 Hb_000979_140 Hb_000979_140 Hb_000589_170--Hb_000979_140 Hb_000331_570 Hb_000331_570 Hb_000331_420--Hb_000331_570 Hb_000189_130 Hb_000189_130 Hb_000331_420--Hb_000189_130 Hb_009851_010 Hb_009851_010 Hb_000331_420--Hb_009851_010 Hb_002871_040 Hb_002871_040 Hb_000331_420--Hb_002871_040 Hb_000152_180 Hb_000152_180 Hb_000331_420--Hb_000152_180 Hb_001247_210 Hb_001247_210 Hb_023091_010--Hb_001247_210 Hb_008375_030 Hb_008375_030 Hb_023091_010--Hb_008375_030 Hb_023091_010--Hb_000979_140 Hb_004577_010 Hb_004577_010 Hb_023091_010--Hb_004577_010 Hb_002026_090 Hb_002026_090 Hb_023091_010--Hb_002026_090 Hb_000620_020--Hb_002871_040 Hb_001102_070 Hb_001102_070 Hb_000620_020--Hb_001102_070 Hb_101334_020 Hb_101334_020 Hb_000620_020--Hb_101334_020 Hb_002783_190 Hb_002783_190 Hb_000620_020--Hb_002783_190 Hb_006438_020 Hb_006438_020 Hb_000620_020--Hb_006438_020 Hb_007426_220 Hb_007426_220 Hb_000620_020--Hb_007426_220 Hb_027506_040 Hb_027506_040 Hb_000398_170--Hb_027506_040 Hb_000122_190 Hb_000122_190 Hb_000398_170--Hb_000122_190 Hb_000398_170--Hb_005214_170 Hb_003266_030 Hb_003266_030 Hb_000398_170--Hb_003266_030 Hb_000907_180 Hb_000907_180 Hb_000398_170--Hb_000907_180 Hb_000116_250 Hb_000116_250 Hb_000398_170--Hb_000116_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.275112 0.39106 1.38674 0.486003 0 0.284942
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.237691 0.299123 0.276194 0.690841 0.690891

CAGE analysis