Hb_000351_030

Information

Type -
Description -
Location Contig351: 28335-29463
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa024705mg
description hypothetical protein
nr
ID AAT09451.1
description putative NBS-LRR type disease resistance protein [Prunus persica]
swissprot
ID -
description -
trembl
ID Q6PKX5
description Putative NBS-LRR type disease resistance protein OS=Prunus persica GN=RPM1 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000351_030 0.0 - - putative NBS-LRR type disease resistance protein [Prunus persica]
2 Hb_139388_010 0.0003165017 - - PREDICTED: uncharacterized protein LOC104222982, partial [Nicotiana sylvestris]
3 Hb_001110_020 0.0008463404 - - hypothetical protein JCGZ_03693 [Jatropha curcas]
4 Hb_181535_010 0.0023748497 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_030928_010 0.0030724447 - - -
6 Hb_149358_010 0.0030963724 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
7 Hb_083493_050 0.004478962 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
8 Hb_076908_010 0.0050017327 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
9 Hb_000174_190 0.0057264957 - - unnamed protein product [Coffea canephora]
10 Hb_090826_010 0.0078069022 - - PREDICTED: uncharacterized protein LOC105786910 [Gossypium raimondii]
11 Hb_004785_010 0.0098490424 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_022206_060 0.0121853557 - - -
13 Hb_047040_010 0.0204821162 - - integrase [Gossypium herbaceum]
14 Hb_000590_020 0.0251233402 - - hypothetical protein JCGZ_18748 [Jatropha curcas]
15 Hb_000139_440 0.0359438396 - - unnamed protein product [Coffea canephora]
16 Hb_168311_010 0.0586558075 - - -
17 Hb_012286_070 0.0865639259 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
18 Hb_000450_140 0.0866624278 - - hypothetical protein POPTR_0009s06810g [Populus trichocarpa]
19 Hb_020818_010 0.0890748563 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
20 Hb_070247_010 0.0906620243 - - hypothetical protein [Pseudomonas tolaasii]

Gene co-expression network

sample Hb_000351_030 Hb_000351_030 Hb_139388_010 Hb_139388_010 Hb_000351_030--Hb_139388_010 Hb_001110_020 Hb_001110_020 Hb_000351_030--Hb_001110_020 Hb_181535_010 Hb_181535_010 Hb_000351_030--Hb_181535_010 Hb_030928_010 Hb_030928_010 Hb_000351_030--Hb_030928_010 Hb_149358_010 Hb_149358_010 Hb_000351_030--Hb_149358_010 Hb_083493_050 Hb_083493_050 Hb_000351_030--Hb_083493_050 Hb_139388_010--Hb_001110_020 Hb_139388_010--Hb_181535_010 Hb_139388_010--Hb_149358_010 Hb_139388_010--Hb_030928_010 Hb_139388_010--Hb_083493_050 Hb_001110_020--Hb_149358_010 Hb_001110_020--Hb_181535_010 Hb_001110_020--Hb_083493_050 Hb_001110_020--Hb_030928_010 Hb_181535_010--Hb_030928_010 Hb_090826_010 Hb_090826_010 Hb_181535_010--Hb_090826_010 Hb_181535_010--Hb_149358_010 Hb_030928_010--Hb_090826_010 Hb_030928_010--Hb_149358_010 Hb_149358_010--Hb_083493_050 Hb_076908_010 Hb_076908_010 Hb_149358_010--Hb_076908_010 Hb_000174_190 Hb_000174_190 Hb_149358_010--Hb_000174_190 Hb_083493_050--Hb_076908_010 Hb_083493_050--Hb_000174_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0768961 0.0168626 0

CAGE analysis