Hb_000352_020

Information

Type transcription factor
Description TF Family: ERF
Location Contig352: 41811-42665
Sequence    

Annotation

kegg
ID pop:POPTR_0001s15710g
description hypothetical protein
nr
ID XP_012067386.1
description PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
swissprot
ID Q9M644
description Ethylene-responsive transcription factor LEP OS=Arabidopsis thaliana GN=LEP PE=2 SV=1
trembl
ID A0A067L3S2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26896 PE=4 SV=1
Gene Ontology
ID GO:0050789
description ethylene-responsive transcription factor lep-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_020 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
2 Hb_009838_030 0.024691388 - - Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
3 Hb_002014_120 0.0472389933 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
4 Hb_005428_010 0.0484385542 - - cytochrome P450, putative [Ricinus communis]
5 Hb_003073_060 0.0527045132 - - -
6 Hb_179367_010 0.0535993466 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
7 Hb_001948_100 0.0568516192 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004652_040 0.0575313945 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
9 Hb_104362_020 0.0635720895 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
10 Hb_103000_010 0.0708901554 - - hypothetical protein POPTR_0007s02210g [Populus trichocarpa]
11 Hb_003337_010 0.0725533043 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000152_090 0.0874029583 - - unnamed protein product [Coffea canephora]
13 Hb_151027_010 0.0884491221 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
14 Hb_000174_130 0.088603411 - - flowering locus T-like protein [Fagus crenata]
15 Hb_007125_020 0.0944306069 - - hypothetical protein POPTR_0003s18010g [Populus trichocarpa]
16 Hb_001006_080 0.1016845637 - - hypothetical protein JCGZ_04862 [Jatropha curcas]
17 Hb_166700_010 0.1049729772 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
18 Hb_003878_130 0.1094987653 - - -
19 Hb_008196_010 0.1188337317 - - unnamed protein product [Coffea canephora]
20 Hb_011671_360 0.120033794 - - Hyoscyamine 6-dioxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000352_020 Hb_000352_020 Hb_009838_030 Hb_009838_030 Hb_000352_020--Hb_009838_030 Hb_002014_120 Hb_002014_120 Hb_000352_020--Hb_002014_120 Hb_005428_010 Hb_005428_010 Hb_000352_020--Hb_005428_010 Hb_003073_060 Hb_003073_060 Hb_000352_020--Hb_003073_060 Hb_179367_010 Hb_179367_010 Hb_000352_020--Hb_179367_010 Hb_001948_100 Hb_001948_100 Hb_000352_020--Hb_001948_100 Hb_009838_030--Hb_002014_120 Hb_009838_030--Hb_001948_100 Hb_004652_040 Hb_004652_040 Hb_009838_030--Hb_004652_040 Hb_009838_030--Hb_179367_010 Hb_003337_010 Hb_003337_010 Hb_009838_030--Hb_003337_010 Hb_002014_120--Hb_004652_040 Hb_103000_010 Hb_103000_010 Hb_002014_120--Hb_103000_010 Hb_002014_120--Hb_179367_010 Hb_002014_120--Hb_003337_010 Hb_002014_120--Hb_001948_100 Hb_005428_010--Hb_003073_060 Hb_005428_010--Hb_009838_030 Hb_005428_010--Hb_001948_100 Hb_011671_360 Hb_011671_360 Hb_005428_010--Hb_011671_360 Hb_000072_010 Hb_000072_010 Hb_005428_010--Hb_000072_010 Hb_003073_060--Hb_009838_030 Hb_003073_060--Hb_001948_100 Hb_003073_060--Hb_011671_360 Hb_000152_090 Hb_000152_090 Hb_003073_060--Hb_000152_090 Hb_104362_020 Hb_104362_020 Hb_179367_010--Hb_104362_020 Hb_179367_010--Hb_004652_040 Hb_179367_010--Hb_103000_010 Hb_000174_130 Hb_000174_130 Hb_179367_010--Hb_000174_130 Hb_151027_010 Hb_151027_010 Hb_179367_010--Hb_151027_010 Hb_001948_100--Hb_000152_090 Hb_001948_100--Hb_003337_010 Hb_001948_100--Hb_004652_040 Hb_001948_100--Hb_103000_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0450491 0.0404695 0.163999 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis