Hb_000352_070

Information

Type -
Description -
Location Contig352: 79182-85098
Sequence    

Annotation

kegg
ID rcu:RCOM_1444030
description Potassium transporter, putative
nr
ID XP_002512807.1
description Potassium transporter, putative [Ricinus communis]
swissprot
ID Q9LD18
description Potassium transporter 4 OS=Arabidopsis thaliana GN=POT4 PE=1 SV=2
trembl
ID B9RGU8
description Potassium transporter OS=Ricinus communis GN=RCOM_1444030 PE=3 SV=1
Gene Ontology
ID GO:0016021
description potassium transporter 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36549: 79459-85166 , PASA_asmbl_36550: 84722-85485 , PASA_asmbl_36552: 81422-81597
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_070 0.0 - - Potassium transporter, putative [Ricinus communis]
2 Hb_002027_280 0.0637223666 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
3 Hb_134362_010 0.0740291205 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]
4 Hb_000949_020 0.0747504555 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
5 Hb_004429_010 0.0756756452 - - calcineurin-like phosphoesterase [Manihot esculenta]
6 Hb_002284_170 0.0766915942 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
7 Hb_004785_030 0.0779901257 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
8 Hb_000479_240 0.0786675716 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
9 Hb_009252_050 0.0826505092 - - protein binding protein, putative [Ricinus communis]
10 Hb_001277_300 0.0836971404 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
11 Hb_000334_130 0.0837444999 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
12 Hb_010712_090 0.084688884 - - PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]
13 Hb_001454_170 0.0873839416 - - PREDICTED: uncharacterized protein LOC105643431 [Jatropha curcas]
14 Hb_000809_170 0.0880354968 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog isoform X1 [Jatropha curcas]
15 Hb_003581_170 0.0880449856 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
16 Hb_004645_070 0.0883380683 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
17 Hb_001904_030 0.088896421 - - PREDICTED: importin-5 [Jatropha curcas]
18 Hb_000174_290 0.0889685849 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
19 Hb_004410_120 0.0891411984 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
20 Hb_000365_330 0.0893423238 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000352_070 Hb_000352_070 Hb_002027_280 Hb_002027_280 Hb_000352_070--Hb_002027_280 Hb_134362_010 Hb_134362_010 Hb_000352_070--Hb_134362_010 Hb_000949_020 Hb_000949_020 Hb_000352_070--Hb_000949_020 Hb_004429_010 Hb_004429_010 Hb_000352_070--Hb_004429_010 Hb_002284_170 Hb_002284_170 Hb_000352_070--Hb_002284_170 Hb_004785_030 Hb_004785_030 Hb_000352_070--Hb_004785_030 Hb_002027_280--Hb_004429_010 Hb_003124_160 Hb_003124_160 Hb_002027_280--Hb_003124_160 Hb_001904_030 Hb_001904_030 Hb_002027_280--Hb_001904_030 Hb_001673_050 Hb_001673_050 Hb_002027_280--Hb_001673_050 Hb_001277_300 Hb_001277_300 Hb_002027_280--Hb_001277_300 Hb_009252_050 Hb_009252_050 Hb_134362_010--Hb_009252_050 Hb_001668_010 Hb_001668_010 Hb_134362_010--Hb_001668_010 Hb_134362_010--Hb_001673_050 Hb_002849_170 Hb_002849_170 Hb_134362_010--Hb_002849_170 Hb_134362_010--Hb_004429_010 Hb_000120_910 Hb_000120_910 Hb_000949_020--Hb_000120_910 Hb_000949_020--Hb_001673_050 Hb_000949_020--Hb_004429_010 Hb_000949_020--Hb_002284_170 Hb_004129_070 Hb_004129_070 Hb_000949_020--Hb_004129_070 Hb_004517_020 Hb_004517_020 Hb_000949_020--Hb_004517_020 Hb_002092_070 Hb_002092_070 Hb_004429_010--Hb_002092_070 Hb_004429_010--Hb_009252_050 Hb_004429_010--Hb_003124_160 Hb_004429_010--Hb_002284_170 Hb_001221_090 Hb_001221_090 Hb_004429_010--Hb_001221_090 Hb_000958_150 Hb_000958_150 Hb_002284_170--Hb_000958_150 Hb_002284_170--Hb_002092_070 Hb_000700_060 Hb_000700_060 Hb_002284_170--Hb_000700_060 Hb_002284_170--Hb_009252_050 Hb_002119_090 Hb_002119_090 Hb_004785_030--Hb_002119_090 Hb_004785_030--Hb_000700_060 Hb_005188_040 Hb_005188_040 Hb_004785_030--Hb_005188_040 Hb_044653_020 Hb_044653_020 Hb_004785_030--Hb_044653_020 Hb_003604_050 Hb_003604_050 Hb_004785_030--Hb_003604_050 Hb_020805_150 Hb_020805_150 Hb_004785_030--Hb_020805_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.2735 67.6044 27.5131 46.6652 48.7145 31.5886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.0025 13.2194 21.3634 31.9834 34.5531

CAGE analysis