Hb_000352_120

Information

Type -
Description -
Location Contig352: 122327-139466
Sequence    

Annotation

kegg
ID cit:102612526
description uncharacterized LOC102612526
nr
ID XP_012067572.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105630380 [Jatropha curcas]
swissprot
ID Q8RWF4
description Probable magnesium transporter NIPA8 OS=Arabidopsis thaliana GN=At3g26670 PE=2 SV=1
trembl
ID B9RGU0
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1443950 PE=4 SV=1
Gene Ontology
ID GO:0016021
description pentatricopeptide repeat-containing protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36560: 122370-127773 , PASA_asmbl_36561: 123311-124223 , PASA_asmbl_36563: 126305-126483 , PASA_asmbl_36564: 128973-129315 , PASA_asmbl_36566: 132597-132830
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_120 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105630380 [Jatropha curcas]
2 Hb_001004_070 0.0804305597 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000062_540 0.0839992683 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001936_130 0.0857050016 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
5 Hb_003206_090 0.0879594894 - - PREDICTED: protein trichome birefringence-like 5 [Jatropha curcas]
6 Hb_001269_330 0.095151773 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
7 Hb_027380_220 0.0996810806 - - PREDICTED: probable beta-1,3-galactosyltransferase 20 [Jatropha curcas]
8 Hb_043792_040 0.099747855 - - hypothetical protein, partial [Rosa rugosa]
9 Hb_001482_040 0.0999381113 - - conserved hypothetical protein [Ricinus communis]
10 Hb_019181_040 0.1049541458 - - component of oligomeric golgi complex, putative [Ricinus communis]
11 Hb_003777_200 0.1051046041 - - PREDICTED: uncharacterized protein LOC105640933 [Jatropha curcas]
12 Hb_091296_010 0.1056966406 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
13 Hb_001512_040 0.109441048 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
14 Hb_001143_190 0.1110864825 - - PREDICTED: uncharacterized protein LOC105638976 [Jatropha curcas]
15 Hb_004129_140 0.1117265842 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g06470 [Jatropha curcas]
16 Hb_003994_280 0.1119274019 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
17 Hb_000300_600 0.1128445229 - - tubulin alpha chain, putative [Ricinus communis]
18 Hb_000359_310 0.1130070081 - - hypothetical protein JCGZ_03934 [Jatropha curcas]
19 Hb_000212_380 0.1145216003 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
20 Hb_000136_140 0.1149835329 - - PREDICTED: uncharacterized protein LOC105648960 [Jatropha curcas]

Gene co-expression network

sample Hb_000352_120 Hb_000352_120 Hb_001004_070 Hb_001004_070 Hb_000352_120--Hb_001004_070 Hb_000062_540 Hb_000062_540 Hb_000352_120--Hb_000062_540 Hb_001936_130 Hb_001936_130 Hb_000352_120--Hb_001936_130 Hb_003206_090 Hb_003206_090 Hb_000352_120--Hb_003206_090 Hb_001269_330 Hb_001269_330 Hb_000352_120--Hb_001269_330 Hb_027380_220 Hb_027380_220 Hb_000352_120--Hb_027380_220 Hb_001004_070--Hb_001936_130 Hb_005291_050 Hb_005291_050 Hb_001004_070--Hb_005291_050 Hb_003025_100 Hb_003025_100 Hb_001004_070--Hb_003025_100 Hb_012498_010 Hb_012498_010 Hb_001004_070--Hb_012498_010 Hb_001004_070--Hb_027380_220 Hb_024128_020 Hb_024128_020 Hb_001004_070--Hb_024128_020 Hb_002289_060 Hb_002289_060 Hb_000062_540--Hb_002289_060 Hb_043792_040 Hb_043792_040 Hb_000062_540--Hb_043792_040 Hb_000062_540--Hb_001936_130 Hb_004129_140 Hb_004129_140 Hb_000062_540--Hb_004129_140 Hb_019181_040 Hb_019181_040 Hb_000062_540--Hb_019181_040 Hb_001936_130--Hb_027380_220 Hb_091296_010 Hb_091296_010 Hb_001936_130--Hb_091296_010 Hb_001936_130--Hb_003025_100 Hb_001936_130--Hb_012498_010 Hb_000260_010 Hb_000260_010 Hb_001936_130--Hb_000260_010 Hb_003777_200 Hb_003777_200 Hb_003206_090--Hb_003777_200 Hb_002473_050 Hb_002473_050 Hb_003206_090--Hb_002473_050 Hb_000317_040 Hb_000317_040 Hb_003206_090--Hb_000317_040 Hb_007904_210 Hb_007904_210 Hb_003206_090--Hb_007904_210 Hb_000300_600 Hb_000300_600 Hb_003206_090--Hb_000300_600 Hb_007481_010 Hb_007481_010 Hb_001269_330--Hb_007481_010 Hb_000256_150 Hb_000256_150 Hb_001269_330--Hb_000256_150 Hb_001087_030 Hb_001087_030 Hb_001269_330--Hb_001087_030 Hb_001269_330--Hb_019181_040 Hb_001269_330--Hb_012498_010 Hb_000046_500 Hb_000046_500 Hb_001269_330--Hb_000046_500 Hb_027380_220--Hb_000260_010 Hb_027380_220--Hb_005291_050 Hb_029879_070 Hb_029879_070 Hb_027380_220--Hb_029879_070 Hb_001912_110 Hb_001912_110 Hb_027380_220--Hb_001912_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.59748 3.84343 9.7204 18.7266 11.1588 9.08829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.42401 6.80403 14.9482 7.69746 10.8337

CAGE analysis