Hb_000352_150

Information

Type -
Description -
Location Contig352: 143864-144730
Sequence    

Annotation

kegg
ID rcu:RCOM_1429590
description Protein FRIGIDA, putative
nr
ID KDP31265.1
description hypothetical protein JCGZ_11641 [Jatropha curcas]
swissprot
ID Q5XV31
description FRIGIDA-like protein 5 OS=Arabidopsis thaliana GN=FRL5 PE=2 SV=1
trembl
ID A0A067KG96
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11641 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_150 0.0 - - hypothetical protein JCGZ_11641 [Jatropha curcas]
2 Hb_002875_090 0.0850866158 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_001980_020 0.0931938432 - - -
4 Hb_170116_010 0.1046936729 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
5 Hb_003636_090 0.1175500837 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
6 Hb_001454_390 0.1213241507 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
7 Hb_003253_010 0.1265089015 - - PREDICTED: uncharacterized protein LOC105111108 [Populus euphratica]
8 Hb_000038_130 0.1315357545 - - -
9 Hb_004657_010 0.1348254137 - - PREDICTED: uncharacterized protein LOC105639764 [Jatropha curcas]
10 Hb_003777_070 0.1352344677 - - -
11 Hb_000977_140 0.1397125842 - - PREDICTED: uncharacterized protein LOC105801335 [Gossypium raimondii]
12 Hb_043637_010 0.149385326 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]
13 Hb_178345_010 0.1508828052 - - hypothetical protein PHAVU_004G084200g [Phaseolus vulgaris]
14 Hb_002078_430 0.1511583604 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
15 Hb_001780_060 0.1538816034 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
16 Hb_001635_220 0.1565203848 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
17 Hb_010098_080 0.1576294249 - - PREDICTED: non-specific phospholipase C4-like [Jatropha curcas]
18 Hb_004060_010 0.1585968998 - - -
19 Hb_000590_090 0.1595976079 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
20 Hb_053262_010 0.1601887918 - - -

Gene co-expression network

sample Hb_000352_150 Hb_000352_150 Hb_002875_090 Hb_002875_090 Hb_000352_150--Hb_002875_090 Hb_001980_020 Hb_001980_020 Hb_000352_150--Hb_001980_020 Hb_170116_010 Hb_170116_010 Hb_000352_150--Hb_170116_010 Hb_003636_090 Hb_003636_090 Hb_000352_150--Hb_003636_090 Hb_001454_390 Hb_001454_390 Hb_000352_150--Hb_001454_390 Hb_003253_010 Hb_003253_010 Hb_000352_150--Hb_003253_010 Hb_002875_090--Hb_003636_090 Hb_001780_060 Hb_001780_060 Hb_002875_090--Hb_001780_060 Hb_002875_090--Hb_001454_390 Hb_002875_090--Hb_170116_010 Hb_003304_080 Hb_003304_080 Hb_002875_090--Hb_003304_080 Hb_003777_070 Hb_003777_070 Hb_001980_020--Hb_003777_070 Hb_001980_020--Hb_170116_010 Hb_001980_020--Hb_003253_010 Hb_001980_020--Hb_002875_090 Hb_007810_050 Hb_007810_050 Hb_001980_020--Hb_007810_050 Hb_043637_010 Hb_043637_010 Hb_170116_010--Hb_043637_010 Hb_000523_020 Hb_000523_020 Hb_170116_010--Hb_000523_020 Hb_170116_010--Hb_001454_390 Hb_001635_220 Hb_001635_220 Hb_170116_010--Hb_001635_220 Hb_004738_090 Hb_004738_090 Hb_003636_090--Hb_004738_090 Hb_000085_340 Hb_000085_340 Hb_003636_090--Hb_000085_340 Hb_002067_160 Hb_002067_160 Hb_003636_090--Hb_002067_160 Hb_000997_260 Hb_000997_260 Hb_003636_090--Hb_000997_260 Hb_000270_400 Hb_000270_400 Hb_003636_090--Hb_000270_400 Hb_001454_390--Hb_001780_060 Hb_000590_090 Hb_000590_090 Hb_001454_390--Hb_000590_090 Hb_001454_390--Hb_003253_010 Hb_000038_130 Hb_000038_130 Hb_001454_390--Hb_000038_130 Hb_010098_080 Hb_010098_080 Hb_003253_010--Hb_010098_080 Hb_003253_010--Hb_003777_070 Hb_003253_010--Hb_007810_050 Hb_002477_230 Hb_002477_230 Hb_003253_010--Hb_002477_230 Hb_000500_310 Hb_000500_310 Hb_003253_010--Hb_000500_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.2245 0.132716 0.695442 0.255581 17.4112 13.6331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6333 12.848 3.47996 1.11835 0.386417

CAGE analysis