Hb_000352_190

Information

Type -
Description -
Location Contig352: 184250-186513
Sequence    

Annotation

kegg
ID rcu:RCOM_1443900
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_012067404.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]
swissprot
ID Q3EBD3
description DEAD-box ATP-dependent RNA helicase 41 OS=Arabidopsis thaliana GN=RH41 PE=2 SV=1
trembl
ID A0A067L0E3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26910 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 41

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_190 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]
2 Hb_028912_050 0.0656780727 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
3 Hb_000366_040 0.067713176 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
4 Hb_005686_090 0.0727910381 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
5 Hb_002063_020 0.0783906168 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17140 [Jatropha curcas]
6 Hb_004225_050 0.079623146 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
7 Hb_008959_010 0.0805571479 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002055_040 0.0809360353 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
9 Hb_002099_080 0.0863798791 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
10 Hb_001498_010 0.0880538992 - - PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
11 Hb_000388_090 0.0889368123 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
12 Hb_000739_310 0.0904120266 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
13 Hb_009486_060 0.0914963188 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
14 Hb_000707_050 0.0932799609 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
15 Hb_001008_120 0.0934999661 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
16 Hb_006711_100 0.0942035995 - - PREDICTED: uncharacterized protein LOC105637078 [Jatropha curcas]
17 Hb_005736_020 0.0947654609 - - hypothetical protein POPTR_0005s20940g [Populus trichocarpa]
18 Hb_007820_010 0.0949176398 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: protein FLOWERING LOCUS D [Jatropha curcas]
19 Hb_012799_030 0.0949833105 - - PREDICTED: pentatricopeptide repeat-containing protein At1g55630-like [Jatropha curcas]
20 Hb_000883_060 0.0953453334 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000352_190 Hb_000352_190 Hb_028912_050 Hb_028912_050 Hb_000352_190--Hb_028912_050 Hb_000366_040 Hb_000366_040 Hb_000352_190--Hb_000366_040 Hb_005686_090 Hb_005686_090 Hb_000352_190--Hb_005686_090 Hb_002063_020 Hb_002063_020 Hb_000352_190--Hb_002063_020 Hb_004225_050 Hb_004225_050 Hb_000352_190--Hb_004225_050 Hb_008959_010 Hb_008959_010 Hb_000352_190--Hb_008959_010 Hb_028912_050--Hb_004225_050 Hb_010710_070 Hb_010710_070 Hb_028912_050--Hb_010710_070 Hb_188063_020 Hb_188063_020 Hb_028912_050--Hb_188063_020 Hb_000028_480 Hb_000028_480 Hb_028912_050--Hb_000028_480 Hb_004963_030 Hb_004963_030 Hb_028912_050--Hb_004963_030 Hb_001008_120 Hb_001008_120 Hb_028912_050--Hb_001008_120 Hb_000366_040--Hb_002063_020 Hb_000388_090 Hb_000388_090 Hb_000366_040--Hb_000388_090 Hb_004712_130 Hb_004712_130 Hb_000366_040--Hb_004712_130 Hb_002099_080 Hb_002099_080 Hb_000366_040--Hb_002099_080 Hb_005736_020 Hb_005736_020 Hb_000366_040--Hb_005736_020 Hb_005686_090--Hb_005736_020 Hb_001304_110 Hb_001304_110 Hb_005686_090--Hb_001304_110 Hb_002518_260 Hb_002518_260 Hb_005686_090--Hb_002518_260 Hb_029510_050 Hb_029510_050 Hb_005686_090--Hb_029510_050 Hb_005686_090--Hb_001008_120 Hb_005686_090--Hb_028912_050 Hb_003253_040 Hb_003253_040 Hb_002063_020--Hb_003253_040 Hb_002063_020--Hb_000388_090 Hb_002063_020--Hb_002099_080 Hb_002942_100 Hb_002942_100 Hb_002063_020--Hb_002942_100 Hb_004225_050--Hb_188063_020 Hb_006649_050 Hb_006649_050 Hb_004225_050--Hb_006649_050 Hb_004225_050--Hb_000028_480 Hb_002849_100 Hb_002849_100 Hb_004225_050--Hb_002849_100 Hb_001004_060 Hb_001004_060 Hb_004225_050--Hb_001004_060 Hb_000039_150 Hb_000039_150 Hb_008959_010--Hb_000039_150 Hb_004108_160 Hb_004108_160 Hb_008959_010--Hb_004108_160 Hb_002263_020 Hb_002263_020 Hb_008959_010--Hb_002263_020 Hb_002769_030 Hb_002769_030 Hb_008959_010--Hb_002769_030 Hb_008959_010--Hb_001304_110 Hb_011228_010 Hb_011228_010 Hb_008959_010--Hb_011228_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.35105 5.73919 4.5311 5.54061 8.50819 8.01998
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.45485 6.57937 11.5195 6.90837 12.216

CAGE analysis