Hb_000352_270

Information

Type -
Description -
Location Contig352: 225647-227098
Sequence    

Annotation

kegg
ID rcu:RCOM_1443630
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012067416.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
swissprot
ID Q38959
description Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2 SV=1
trembl
ID A0A067LBM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26918 PE=4 SV=1
Gene Ontology
ID GO:0016787
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36589: 226030-226313
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_270 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
2 Hb_003020_220 0.0682317572 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
3 Hb_082609_010 0.0809485867 - - PREDICTED: uncharacterized protein LOC105644299 [Jatropha curcas]
4 Hb_007317_200 0.0820808638 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_002725_120 0.0839183098 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic [Jatropha curcas]
6 Hb_000614_220 0.0916036722 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]
7 Hb_001318_270 0.092357351 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
8 Hb_000928_210 0.0928790578 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
9 Hb_005188_020 0.0934029069 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
10 Hb_017358_030 0.0955222825 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
11 Hb_000614_160 0.0965171326 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
12 Hb_027654_060 0.096642058 - - RecName: Full=Probable pyridoxal 5'-phosphate synthase subunit PDX1; Short=PLP synthase subunit PDX1; AltName: Full=Ethylene-inducible protein HEVER [Hevea brasiliensis]
13 Hb_009382_010 0.0966528718 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
14 Hb_000047_030 0.0970145057 - - tfiif-alpha, putative [Ricinus communis]
15 Hb_002110_150 0.0971559635 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
16 Hb_003142_020 0.0972955142 - - PREDICTED: uncharacterized protein LOC105648334 [Jatropha curcas]
17 Hb_002046_180 0.0973450058 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
18 Hb_002799_110 0.09996067 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
19 Hb_000230_500 0.1001712724 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
20 Hb_000836_040 0.1007123584 - - PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000352_270 Hb_000352_270 Hb_003020_220 Hb_003020_220 Hb_000352_270--Hb_003020_220 Hb_082609_010 Hb_082609_010 Hb_000352_270--Hb_082609_010 Hb_007317_200 Hb_007317_200 Hb_000352_270--Hb_007317_200 Hb_002725_120 Hb_002725_120 Hb_000352_270--Hb_002725_120 Hb_000614_220 Hb_000614_220 Hb_000352_270--Hb_000614_220 Hb_001318_270 Hb_001318_270 Hb_000352_270--Hb_001318_270 Hb_079312_010 Hb_079312_010 Hb_003020_220--Hb_079312_010 Hb_002988_040 Hb_002988_040 Hb_003020_220--Hb_002988_040 Hb_003020_220--Hb_082609_010 Hb_005237_050 Hb_005237_050 Hb_003020_220--Hb_005237_050 Hb_000510_290 Hb_000510_290 Hb_003020_220--Hb_000510_290 Hb_027654_060 Hb_027654_060 Hb_082609_010--Hb_027654_060 Hb_082609_010--Hb_000614_220 Hb_001898_160 Hb_001898_160 Hb_082609_010--Hb_001898_160 Hb_103118_010 Hb_103118_010 Hb_082609_010--Hb_103118_010 Hb_004724_080 Hb_004724_080 Hb_007317_200--Hb_004724_080 Hb_075449_010 Hb_075449_010 Hb_007317_200--Hb_075449_010 Hb_017358_030 Hb_017358_030 Hb_007317_200--Hb_017358_030 Hb_006452_170 Hb_006452_170 Hb_007317_200--Hb_006452_170 Hb_000614_160 Hb_000614_160 Hb_007317_200--Hb_000614_160 Hb_009767_110 Hb_009767_110 Hb_002725_120--Hb_009767_110 Hb_006649_050 Hb_006649_050 Hb_002725_120--Hb_006649_050 Hb_000291_050 Hb_000291_050 Hb_002725_120--Hb_000291_050 Hb_003142_020 Hb_003142_020 Hb_002725_120--Hb_003142_020 Hb_005496_130 Hb_005496_130 Hb_002725_120--Hb_005496_130 Hb_000165_250 Hb_000165_250 Hb_002725_120--Hb_000165_250 Hb_002799_110 Hb_002799_110 Hb_000614_220--Hb_002799_110 Hb_000614_220--Hb_027654_060 Hb_000614_220--Hb_000614_160 Hb_000614_220--Hb_000510_290 Hb_012675_050 Hb_012675_050 Hb_000614_220--Hb_012675_050 Hb_012114_070 Hb_012114_070 Hb_000614_220--Hb_012114_070 Hb_012325_020 Hb_012325_020 Hb_001318_270--Hb_012325_020 Hb_002110_150 Hb_002110_150 Hb_001318_270--Hb_002110_150 Hb_001726_020 Hb_001726_020 Hb_001318_270--Hb_001726_020 Hb_000041_100 Hb_000041_100 Hb_001318_270--Hb_000041_100 Hb_050622_050 Hb_050622_050 Hb_001318_270--Hb_050622_050 Hb_000783_020 Hb_000783_020 Hb_001318_270--Hb_000783_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.22079 2.8343 2.32106 1.34789 2.62618 3.10428
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.24235 5.40769 6.17438 1.95579 4.47636

CAGE analysis