Hb_000352_340

Information

Type -
Description -
Location Contig352: 273846-288641
Sequence    

Annotation

kegg
ID rcu:RCOM_1443590
description Transportin-3, putative
nr
ID XP_012067423.1
description PREDICTED: importin-13 [Jatropha curcas]
swissprot
ID Q9USZ2
description Uncharacterized protein C11G11.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC11G11.07 PE=3 SV=2
trembl
ID A0A067L3U1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26921 PE=4 SV=1
Gene Ontology
ID GO:0005622
description importin-13 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36600: 275518-275872 , PASA_asmbl_36601: 283744-286039 , PASA_asmbl_36602: 286262-288608
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_340 0.0 - - PREDICTED: importin-13 [Jatropha curcas]
2 Hb_001440_030 0.0666442677 - - PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
3 Hb_002908_050 0.0791034777 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
4 Hb_001876_010 0.0823242741 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]
5 Hb_000189_550 0.0826523692 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
6 Hb_000028_390 0.0856096556 - - PREDICTED: extra-large guanine nucleotide-binding protein 3-like [Jatropha curcas]
7 Hb_000066_170 0.0887982152 - - PREDICTED: phosphatidylinositol-3-phosphatase myotubularin-1 isoform X2 [Jatropha curcas]
8 Hb_000011_060 0.0891549761 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
9 Hb_006816_280 0.0932577983 - - PREDICTED: uncharacterized protein LOC105647448 isoform X2 [Jatropha curcas]
10 Hb_009296_040 0.0968300682 - - hypothetical protein L484_007435 [Morus notabilis]
11 Hb_000872_010 0.0973883302 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
12 Hb_003994_150 0.0981280187 - - PREDICTED: pyrophosphate-energized membrane proton pump 2 [Jatropha curcas]
13 Hb_001105_020 0.0990550714 - - expressed protein, putative [Ricinus communis]
14 Hb_000140_210 0.1007868326 - - sec10, putative [Ricinus communis]
15 Hb_003294_090 0.1015862031 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004449_080 0.102214257 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
17 Hb_000537_050 0.1032922708 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
18 Hb_002026_150 0.1035914952 transcription factor TF Family: SNF2 PREDICTED: DNA repair helicase XPB1 isoform X1 [Jatropha curcas]
19 Hb_019616_020 0.1037776432 - - PREDICTED: alanine--tRNA ligase [Jatropha curcas]
20 Hb_025193_040 0.1038392533 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]

Gene co-expression network

sample Hb_000352_340 Hb_000352_340 Hb_001440_030 Hb_001440_030 Hb_000352_340--Hb_001440_030 Hb_002908_050 Hb_002908_050 Hb_000352_340--Hb_002908_050 Hb_001876_010 Hb_001876_010 Hb_000352_340--Hb_001876_010 Hb_000189_550 Hb_000189_550 Hb_000352_340--Hb_000189_550 Hb_000028_390 Hb_000028_390 Hb_000352_340--Hb_000028_390 Hb_000066_170 Hb_000066_170 Hb_000352_340--Hb_000066_170 Hb_001440_030--Hb_000066_170 Hb_000261_480 Hb_000261_480 Hb_001440_030--Hb_000261_480 Hb_000872_010 Hb_000872_010 Hb_001440_030--Hb_000872_010 Hb_001440_030--Hb_001876_010 Hb_009296_040 Hb_009296_040 Hb_001440_030--Hb_009296_040 Hb_002908_050--Hb_001876_010 Hb_002908_050--Hb_000189_550 Hb_000984_170 Hb_000984_170 Hb_002908_050--Hb_000984_170 Hb_000011_060 Hb_000011_060 Hb_002908_050--Hb_000011_060 Hb_000363_040 Hb_000363_040 Hb_002908_050--Hb_000363_040 Hb_004480_100 Hb_004480_100 Hb_002908_050--Hb_004480_100 Hb_001876_010--Hb_000011_060 Hb_001876_010--Hb_000189_550 Hb_000069_210 Hb_000069_210 Hb_001876_010--Hb_000069_210 Hb_001876_010--Hb_000028_390 Hb_001876_010--Hb_000984_170 Hb_001105_020 Hb_001105_020 Hb_000189_550--Hb_001105_020 Hb_000189_550--Hb_000011_060 Hb_000352_310 Hb_000352_310 Hb_000189_550--Hb_000352_310 Hb_000656_010 Hb_000656_010 Hb_000189_550--Hb_000656_010 Hb_000028_390--Hb_009296_040 Hb_000174_180 Hb_000174_180 Hb_000028_390--Hb_000174_180 Hb_004449_080 Hb_004449_080 Hb_000028_390--Hb_004449_080 Hb_000140_210 Hb_000140_210 Hb_000028_390--Hb_000140_210 Hb_000028_390--Hb_000011_060 Hb_000066_170--Hb_000140_210 Hb_085781_020 Hb_085781_020 Hb_000066_170--Hb_085781_020 Hb_000592_030 Hb_000592_030 Hb_000066_170--Hb_000592_030 Hb_000537_050 Hb_000537_050 Hb_000066_170--Hb_000537_050 Hb_000066_170--Hb_009296_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.06758 2.1602 1.46668 2.3346 2.38051 2.35213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.13342 1.18726 3.55802 4.16701 3.23145

CAGE analysis