Hb_000352_350

Information

Type -
Description -
Location Contig352: 292150-295144
Sequence    

Annotation

kegg
ID rcu:RCOM_1443580
description glutaredoxin, grx, putative
nr
ID XP_012067424.1
description PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
swissprot
ID Q84Y95
description Monothiol glutaredoxin-S14, chloroplastic OS=Arabidopsis thaliana GN=GRXS14 PE=1 SV=2
trembl
ID A0A067LCS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26922 PE=4 SV=1
Gene Ontology
ID GO:0009570
description monothiol glutaredoxin- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36603: 292149-295253
cDNA
(Sanger)
(ID:Location)		 004_I17.ab1: 292168-295137 , 010_O13.ab1: 292149-295051

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_350 0.0 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
2 Hb_007290_030 0.0658440301 transcription factor TF Family: bZIP PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]
3 Hb_000239_060 0.0713687446 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000227_270 0.0745400183 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X1 [Jatropha curcas]
5 Hb_001005_020 0.0772576509 - - PREDICTED: uncharacterized protein LOC105630212 [Jatropha curcas]
6 Hb_000144_070 0.0788840026 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000089_210 0.0808682947 - - unknown [Medicago truncatula]
8 Hb_001776_060 0.0809839887 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
9 Hb_002909_040 0.0823667243 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
10 Hb_002311_380 0.0849585046 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
11 Hb_000282_090 0.0853904646 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
12 Hb_001579_330 0.0867316702 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X2 [Jatropha curcas]
13 Hb_001761_120 0.0868808062 - - hypothetical protein JCGZ_22564 [Jatropha curcas]
14 Hb_001366_090 0.0871106226 transcription factor TF Family: NAC hypothetical protein RCOM_1341380 [Ricinus communis]
15 Hb_000238_040 0.0884969256 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
16 Hb_043792_010 0.088574301 - - PREDICTED: uncharacterized protein LOC105645113 isoform X2 [Jatropha curcas]
17 Hb_001776_210 0.0898306858 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
18 Hb_003760_030 0.0906715996 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
19 Hb_001723_150 0.0910188335 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
20 Hb_000173_310 0.0917710495 - - PREDICTED: uncharacterized protein LOC105631893 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000352_350 Hb_000352_350 Hb_007290_030 Hb_007290_030 Hb_000352_350--Hb_007290_030 Hb_000239_060 Hb_000239_060 Hb_000352_350--Hb_000239_060 Hb_000227_270 Hb_000227_270 Hb_000352_350--Hb_000227_270 Hb_001005_020 Hb_001005_020 Hb_000352_350--Hb_001005_020 Hb_000144_070 Hb_000144_070 Hb_000352_350--Hb_000144_070 Hb_000089_210 Hb_000089_210 Hb_000352_350--Hb_000089_210 Hb_001761_120 Hb_001761_120 Hb_007290_030--Hb_001761_120 Hb_001776_060 Hb_001776_060 Hb_007290_030--Hb_001776_060 Hb_007290_030--Hb_000227_270 Hb_007290_030--Hb_000239_060 Hb_001635_040 Hb_001635_040 Hb_007290_030--Hb_001635_040 Hb_007441_020 Hb_007441_020 Hb_000239_060--Hb_007441_020 Hb_001751_140 Hb_001751_140 Hb_000239_060--Hb_001751_140 Hb_000239_060--Hb_001776_060 Hb_006588_070 Hb_006588_070 Hb_000239_060--Hb_006588_070 Hb_017214_040 Hb_017214_040 Hb_000227_270--Hb_017214_040 Hb_023226_070 Hb_023226_070 Hb_000227_270--Hb_023226_070 Hb_004943_030 Hb_004943_030 Hb_000227_270--Hb_004943_030 Hb_000086_500 Hb_000086_500 Hb_000227_270--Hb_000086_500 Hb_000207_200 Hb_000207_200 Hb_001005_020--Hb_000207_200 Hb_000579_190 Hb_000579_190 Hb_001005_020--Hb_000579_190 Hb_002909_040 Hb_002909_040 Hb_001005_020--Hb_002909_040 Hb_009449_060 Hb_009449_060 Hb_001005_020--Hb_009449_060 Hb_001005_020--Hb_007290_030 Hb_000144_070--Hb_001776_060 Hb_013394_030 Hb_013394_030 Hb_000144_070--Hb_013394_030 Hb_000339_040 Hb_000339_040 Hb_000144_070--Hb_000339_040 Hb_000789_320 Hb_000789_320 Hb_000144_070--Hb_000789_320 Hb_012384_030 Hb_012384_030 Hb_000144_070--Hb_012384_030 Hb_001699_010 Hb_001699_010 Hb_000089_210--Hb_001699_010 Hb_000089_210--Hb_000207_200 Hb_000089_210--Hb_002909_040 Hb_005977_030 Hb_005977_030 Hb_000089_210--Hb_005977_030 Hb_004096_160 Hb_004096_160 Hb_000089_210--Hb_004096_160 Hb_003506_030 Hb_003506_030 Hb_000089_210--Hb_003506_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
80.2259 78.5881 111.721 74.3295 51.1607 43.6806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.9873 50.7306 40.0073 38.8221 46.6819

CAGE analysis