Hb_000352_360

Information

Type -
Description -
Location Contig352: 301124-304585
Sequence    

Annotation

kegg
ID rcu:RCOM_1443470
description AMP dependent CoA ligase, putative (EC:1.13.12.7)
nr
ID XP_012067426.1
description PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
swissprot
ID O24145
description 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1
trembl
ID A0A067LBN4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26923 PE=4 SV=1
Gene Ontology
ID GO:0000166
description 4-coumarate: ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36604: 301067-304587 , PASA_asmbl_36605: 303025-303193 , PASA_asmbl_36606: 304939-305115
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000352_360 0.0 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
2 Hb_002616_020 0.0544035524 - - PREDICTED: peroxidase 3 [Jatropha curcas]
3 Hb_001257_140 0.0682143945 - - Gb:AAF02129.1, putative [Theobroma cacao]
4 Hb_002869_090 0.0811008675 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
5 Hb_170077_020 0.0873184998 - - PREDICTED: probable serine incorporator [Jatropha curcas]
6 Hb_003849_170 0.0873613793 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
7 Hb_000327_100 0.0876773898 - - hypothetical protein JCGZ_06658 [Jatropha curcas]
8 Hb_000334_090 0.1002249702 - - hypothetical protein JCGZ_16789 [Jatropha curcas]
9 Hb_005144_150 0.1009600883 - - hypothetical protein VITISV_013572 [Vitis vinifera]
10 Hb_000659_050 0.1016882996 - - PREDICTED: basic blue protein-like [Jatropha curcas]
11 Hb_000344_030 0.1044894236 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
12 Hb_019299_020 0.1055847954 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
13 Hb_000813_020 0.1074704556 - - PREDICTED: metacaspase-3-like [Jatropha curcas]
14 Hb_027400_020 0.1089631992 - - PREDICTED: uncharacterized protein At5g22580 isoform X2 [Jatropha curcas]
15 Hb_000834_130 0.1117462664 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008731_010 0.1119017659 - - hypothetical protein POPTR_0605s00010g [Populus trichocarpa]
17 Hb_010863_020 0.112381279 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X1 [Jatropha curcas]
18 Hb_000897_010 0.1128120643 - - hypothetical protein JCGZ_13196 [Jatropha curcas]
19 Hb_002768_040 0.1157226798 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007403_100 0.1158243625 - - PREDICTED: probable purple acid phosphatase 20 [Jatropha curcas]

Gene co-expression network

sample Hb_000352_360 Hb_000352_360 Hb_002616_020 Hb_002616_020 Hb_000352_360--Hb_002616_020 Hb_001257_140 Hb_001257_140 Hb_000352_360--Hb_001257_140 Hb_002869_090 Hb_002869_090 Hb_000352_360--Hb_002869_090 Hb_170077_020 Hb_170077_020 Hb_000352_360--Hb_170077_020 Hb_003849_170 Hb_003849_170 Hb_000352_360--Hb_003849_170 Hb_000327_100 Hb_000327_100 Hb_000352_360--Hb_000327_100 Hb_002616_020--Hb_002869_090 Hb_027400_020 Hb_027400_020 Hb_002616_020--Hb_027400_020 Hb_000076_280 Hb_000076_280 Hb_002616_020--Hb_000076_280 Hb_000419_140 Hb_000419_140 Hb_002616_020--Hb_000419_140 Hb_002616_020--Hb_003849_170 Hb_005144_150 Hb_005144_150 Hb_001257_140--Hb_005144_150 Hb_001257_140--Hb_003849_170 Hb_010863_020 Hb_010863_020 Hb_001257_140--Hb_010863_020 Hb_001257_140--Hb_170077_020 Hb_003858_070 Hb_003858_070 Hb_001257_140--Hb_003858_070 Hb_000659_050 Hb_000659_050 Hb_002869_090--Hb_000659_050 Hb_002869_090--Hb_000327_100 Hb_002869_090--Hb_027400_020 Hb_000561_040 Hb_000561_040 Hb_002869_090--Hb_000561_040 Hb_000813_020 Hb_000813_020 Hb_170077_020--Hb_000813_020 Hb_170077_020--Hb_003849_170 Hb_005648_020 Hb_005648_020 Hb_170077_020--Hb_005648_020 Hb_003607_080 Hb_003607_080 Hb_170077_020--Hb_003607_080 Hb_003849_170--Hb_005648_020 Hb_003849_170--Hb_005144_150 Hb_001675_020 Hb_001675_020 Hb_000327_100--Hb_001675_020 Hb_000327_100--Hb_000659_050 Hb_001856_260 Hb_001856_260 Hb_000327_100--Hb_001856_260 Hb_000477_020 Hb_000477_020 Hb_000327_100--Hb_000477_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.108767 17.6359 34.6095 255.435 0.102211 0.15039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0241489 0 0 37.8569 28.8581

CAGE analysis