Hb_000357_070

Information

Type -
Description -
Location Contig357: 120855-129644
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36829: 120837-122904 , PASA_asmbl_36831: 123528-123733 , PASA_asmbl_36832: 123770-123997
cDNA
(Sanger)
(ID:Location)		 003_C05.ab1: 120837-122537

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000357_070 0.0 - - -
2 Hb_034579_020 0.0643463268 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000388_080 0.0991747558 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
4 Hb_002028_110 0.1006912029 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
5 Hb_000635_050 0.1059544481 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
6 Hb_002675_080 0.1071650225 - - PREDICTED: uncharacterized protein LOC105634950 [Jatropha curcas]
7 Hb_000283_140 0.1091193663 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
8 Hb_012807_150 0.1104525081 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
9 Hb_001153_100 0.1114021024 transcription factor TF Family: HB PREDICTED: homeobox protein HD1 [Jatropha curcas]
10 Hb_002374_450 0.1116487958 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
11 Hb_007101_260 0.1131589118 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
12 Hb_004545_080 0.1164810479 - - protein with unknown function [Ricinus communis]
13 Hb_000271_220 0.1179610235 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
14 Hb_000689_050 0.1180472849 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000076_250 0.118618477 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003050_360 0.1196907627 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
17 Hb_000422_080 0.1199752486 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
18 Hb_000099_170 0.1205662466 - - PREDICTED: uncharacterized protein LOC105645733 [Jatropha curcas]
19 Hb_007765_130 0.1210143025 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
20 Hb_001677_040 0.1211169977 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000357_070 Hb_000357_070 Hb_034579_020 Hb_034579_020 Hb_000357_070--Hb_034579_020 Hb_000388_080 Hb_000388_080 Hb_000357_070--Hb_000388_080 Hb_002028_110 Hb_002028_110 Hb_000357_070--Hb_002028_110 Hb_000635_050 Hb_000635_050 Hb_000357_070--Hb_000635_050 Hb_002675_080 Hb_002675_080 Hb_000357_070--Hb_002675_080 Hb_000283_140 Hb_000283_140 Hb_000357_070--Hb_000283_140 Hb_012180_060 Hb_012180_060 Hb_034579_020--Hb_012180_060 Hb_003050_360 Hb_003050_360 Hb_034579_020--Hb_003050_360 Hb_004545_080 Hb_004545_080 Hb_034579_020--Hb_004545_080 Hb_002374_450 Hb_002374_450 Hb_034579_020--Hb_002374_450 Hb_003020_250 Hb_003020_250 Hb_034579_020--Hb_003020_250 Hb_000076_250 Hb_000076_250 Hb_000388_080--Hb_000076_250 Hb_000388_080--Hb_002028_110 Hb_000322_030 Hb_000322_030 Hb_000388_080--Hb_000322_030 Hb_004994_330 Hb_004994_330 Hb_000388_080--Hb_004994_330 Hb_001579_300 Hb_001579_300 Hb_000388_080--Hb_001579_300 Hb_001433_150 Hb_001433_150 Hb_002028_110--Hb_001433_150 Hb_000689_050 Hb_000689_050 Hb_002028_110--Hb_000689_050 Hb_012807_150 Hb_012807_150 Hb_002028_110--Hb_012807_150 Hb_007101_260 Hb_007101_260 Hb_002028_110--Hb_007101_260 Hb_004678_010 Hb_004678_010 Hb_000635_050--Hb_004678_010 Hb_017098_040 Hb_017098_040 Hb_000635_050--Hb_017098_040 Hb_002026_030 Hb_002026_030 Hb_000635_050--Hb_002026_030 Hb_007765_130 Hb_007765_130 Hb_000635_050--Hb_007765_130 Hb_003055_070 Hb_003055_070 Hb_000635_050--Hb_003055_070 Hb_000042_050 Hb_000042_050 Hb_002675_080--Hb_000042_050 Hb_000099_170 Hb_000099_170 Hb_002675_080--Hb_000099_170 Hb_003849_160 Hb_003849_160 Hb_002675_080--Hb_003849_160 Hb_003582_090 Hb_003582_090 Hb_002675_080--Hb_003582_090 Hb_003175_070 Hb_003175_070 Hb_002675_080--Hb_003175_070 Hb_002675_080--Hb_002026_030 Hb_000283_140--Hb_012807_150 Hb_004943_040 Hb_004943_040 Hb_000283_140--Hb_004943_040 Hb_000638_060 Hb_000638_060 Hb_000283_140--Hb_000638_060 Hb_000570_020 Hb_000570_020 Hb_000283_140--Hb_000570_020 Hb_000928_120 Hb_000928_120 Hb_000283_140--Hb_000928_120 Hb_000271_220 Hb_000271_220 Hb_000283_140--Hb_000271_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.42801 4.35685 11.4709 11.8622 0.422576 1.69547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.760302 1.09513 1.18896 3.01179 11.8153

CAGE analysis