Hb_000357_080

Information

Type -
Description -
Location Contig357: 131328-132995
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24060g
description POPTRDRAFT_756224; pentatricopeptide repeat-containing family protein
nr
ID XP_012084595.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic [Jatropha curcas]
swissprot
ID Q9FIF7
description Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1
trembl
ID A0A067LLJ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15079 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000357_080 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic [Jatropha curcas]
2 Hb_004096_020 0.0766361215 - - PREDICTED: KH domain-containing protein At4g18375-like, partial [Fragaria vesca subsp. vesca]
3 Hb_175338_020 0.0773087229 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
4 Hb_046615_020 0.0838626917 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
5 Hb_025477_060 0.0842159966 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
6 Hb_000327_310 0.0843463308 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
7 Hb_007885_070 0.0847095516 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
8 Hb_027073_060 0.0864315993 - - PREDICTED: digalactosyldiacylglycerol synthase 1, chloroplastic [Jatropha curcas]
9 Hb_033594_020 0.0867028011 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
10 Hb_000227_380 0.0884969637 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
11 Hb_022408_010 0.0917325253 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
12 Hb_015026_050 0.0919339517 - - XPA-binding protein, putative [Ricinus communis]
13 Hb_002043_170 0.0923004389 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
14 Hb_147737_010 0.0925127062 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
15 Hb_000096_180 0.0926852905 - - PREDICTED: pentatricopeptide repeat-containing protein At5g67570, chloroplastic-like isoform X1 [Jatropha curcas]
16 Hb_000320_380 0.0931277321 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
17 Hb_007849_020 0.0934961436 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
18 Hb_033834_010 0.0942773999 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
19 Hb_000529_260 0.0944996902 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
20 Hb_001975_020 0.0947699011 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]

Gene co-expression network

sample Hb_000357_080 Hb_000357_080 Hb_004096_020 Hb_004096_020 Hb_000357_080--Hb_004096_020 Hb_175338_020 Hb_175338_020 Hb_000357_080--Hb_175338_020 Hb_046615_020 Hb_046615_020 Hb_000357_080--Hb_046615_020 Hb_025477_060 Hb_025477_060 Hb_000357_080--Hb_025477_060 Hb_000327_310 Hb_000327_310 Hb_000357_080--Hb_000327_310 Hb_007885_070 Hb_007885_070 Hb_000357_080--Hb_007885_070 Hb_004096_020--Hb_046615_020 Hb_001871_040 Hb_001871_040 Hb_004096_020--Hb_001871_040 Hb_003406_040 Hb_003406_040 Hb_004096_020--Hb_003406_040 Hb_123777_030 Hb_123777_030 Hb_004096_020--Hb_123777_030 Hb_000195_020 Hb_000195_020 Hb_004096_020--Hb_000195_020 Hb_004162_280 Hb_004162_280 Hb_175338_020--Hb_004162_280 Hb_000227_380 Hb_000227_380 Hb_175338_020--Hb_000227_380 Hb_000424_010 Hb_000424_010 Hb_175338_020--Hb_000424_010 Hb_002652_040 Hb_002652_040 Hb_175338_020--Hb_002652_040 Hb_000529_260 Hb_000529_260 Hb_175338_020--Hb_000529_260 Hb_007849_020 Hb_007849_020 Hb_175338_020--Hb_007849_020 Hb_001975_020 Hb_001975_020 Hb_046615_020--Hb_001975_020 Hb_002043_170 Hb_002043_170 Hb_046615_020--Hb_002043_170 Hb_000230_370 Hb_000230_370 Hb_046615_020--Hb_000230_370 Hb_031754_010 Hb_031754_010 Hb_046615_020--Hb_031754_010 Hb_000531_090 Hb_000531_090 Hb_046615_020--Hb_000531_090 Hb_000002_440 Hb_000002_440 Hb_025477_060--Hb_000002_440 Hb_147737_010 Hb_147737_010 Hb_025477_060--Hb_147737_010 Hb_000096_180 Hb_000096_180 Hb_025477_060--Hb_000096_180 Hb_000046_450 Hb_000046_450 Hb_025477_060--Hb_000046_450 Hb_025477_060--Hb_046615_020 Hb_025477_060--Hb_001975_020 Hb_000327_310--Hb_001975_020 Hb_004724_360 Hb_004724_360 Hb_000327_310--Hb_004724_360 Hb_073171_080 Hb_073171_080 Hb_000327_310--Hb_073171_080 Hb_000327_310--Hb_000230_370 Hb_000327_310--Hb_046615_020 Hb_001366_040 Hb_001366_040 Hb_000327_310--Hb_001366_040 Hb_002221_050 Hb_002221_050 Hb_007885_070--Hb_002221_050 Hb_000417_160 Hb_000417_160 Hb_007885_070--Hb_000417_160 Hb_007885_070--Hb_000529_260 Hb_019153_020 Hb_019153_020 Hb_007885_070--Hb_019153_020 Hb_000320_380 Hb_000320_380 Hb_007885_070--Hb_000320_380 Hb_007885_070--Hb_000424_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.3096 1.54115 0.747571 0.230418 2.35911 2.54307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.912853 0.522331 1.27242 0.997673 0.822975

CAGE analysis