Hb_000357_120

Information

Type -
Description -
Location Contig357: 155546-157357
Sequence    

Annotation

kegg
ID pop:POPTR_0013s14620g
description hypothetical protein
nr
ID XP_012066603.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
swissprot
ID Q9LQ14
description Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2
trembl
ID A0A067KE47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13515 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36844: 155497-155627
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000357_120 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
2 Hb_000137_020 0.1673890317 - - PREDICTED: ras-related protein RABA5b [Jatropha curcas]
3 Hb_004097_120 0.1694706594 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
4 Hb_089206_010 0.1774152706 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
5 Hb_006185_060 0.1890901934 - - PREDICTED: protein phosphatase 2C 16 [Jatropha curcas]
6 Hb_006472_020 0.1906071636 - - heat shock protein [Cicer arietinum]
7 Hb_009367_080 0.1919410922 transcription factor TF Family: WRKY WRKY transcription factor 42 [Jatropha curcas]
8 Hb_000574_420 0.1938102703 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
9 Hb_011161_020 0.1946597284 - - PREDICTED: DIS3-like exonuclease 2 [Jatropha curcas]
10 Hb_000809_020 0.1952248123 desease resistance Gene Name: RPW8 leucine-rich repeat-containing protein, putative [Ricinus communis]
11 Hb_005018_020 0.1993377266 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Jatropha curcas]
12 Hb_080952_010 0.2031558725 - - PREDICTED: pentatricopeptide repeat-containing protein At4g20770 [Jatropha curcas]
13 Hb_011218_070 0.2032357912 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
14 Hb_007064_010 0.2071284012 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39680 [Jatropha curcas]
15 Hb_002851_080 0.2094291432 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
16 Hb_014231_010 0.2113775969 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
17 Hb_000139_070 0.211400616 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
18 Hb_000189_110 0.21166354 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04750, mitochondrial [Jatropha curcas]
19 Hb_001268_380 0.2131364711 - - PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Jatropha curcas]
20 Hb_026206_020 0.2134274158 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At2g04740 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000357_120 Hb_000357_120 Hb_000137_020 Hb_000137_020 Hb_000357_120--Hb_000137_020 Hb_004097_120 Hb_004097_120 Hb_000357_120--Hb_004097_120 Hb_089206_010 Hb_089206_010 Hb_000357_120--Hb_089206_010 Hb_006185_060 Hb_006185_060 Hb_000357_120--Hb_006185_060 Hb_006472_020 Hb_006472_020 Hb_000357_120--Hb_006472_020 Hb_009367_080 Hb_009367_080 Hb_000357_120--Hb_009367_080 Hb_011161_020 Hb_011161_020 Hb_000137_020--Hb_011161_020 Hb_005551_020 Hb_005551_020 Hb_000137_020--Hb_005551_020 Hb_000574_420 Hb_000574_420 Hb_000137_020--Hb_000574_420 Hb_001427_150 Hb_001427_150 Hb_000137_020--Hb_001427_150 Hb_000137_020--Hb_009367_080 Hb_014231_010 Hb_014231_010 Hb_000137_020--Hb_014231_010 Hb_001882_130 Hb_001882_130 Hb_004097_120--Hb_001882_130 Hb_001008_170 Hb_001008_170 Hb_004097_120--Hb_001008_170 Hb_000661_110 Hb_000661_110 Hb_004097_120--Hb_000661_110 Hb_004097_120--Hb_006185_060 Hb_000479_150 Hb_000479_150 Hb_004097_120--Hb_000479_150 Hb_001221_140 Hb_001221_140 Hb_004097_120--Hb_001221_140 Hb_183443_010 Hb_183443_010 Hb_089206_010--Hb_183443_010 Hb_063943_010 Hb_063943_010 Hb_089206_010--Hb_063943_010 Hb_003688_160 Hb_003688_160 Hb_089206_010--Hb_003688_160 Hb_052689_010 Hb_052689_010 Hb_089206_010--Hb_052689_010 Hb_089206_010--Hb_004097_120 Hb_006185_060--Hb_011161_020 Hb_000120_660 Hb_000120_660 Hb_006185_060--Hb_000120_660 Hb_000122_220 Hb_000122_220 Hb_006185_060--Hb_000122_220 Hb_006185_060--Hb_000574_420 Hb_002329_020 Hb_002329_020 Hb_006185_060--Hb_002329_020 Hb_000479_070 Hb_000479_070 Hb_006185_060--Hb_000479_070 Hb_000229_030 Hb_000229_030 Hb_006472_020--Hb_000229_030 Hb_003910_060 Hb_003910_060 Hb_006472_020--Hb_003910_060 Hb_000890_050 Hb_000890_050 Hb_006472_020--Hb_000890_050 Hb_000189_110 Hb_000189_110 Hb_006472_020--Hb_000189_110 Hb_001862_180 Hb_001862_180 Hb_006472_020--Hb_001862_180 Hb_001268_380 Hb_001268_380 Hb_006472_020--Hb_001268_380 Hb_028472_010 Hb_028472_010 Hb_009367_080--Hb_028472_010 Hb_000037_220 Hb_000037_220 Hb_009367_080--Hb_000037_220 Hb_061878_010 Hb_061878_010 Hb_009367_080--Hb_061878_010 Hb_005563_060 Hb_005563_060 Hb_009367_080--Hb_005563_060 Hb_002375_110 Hb_002375_110 Hb_009367_080--Hb_002375_110 Hb_000256_020 Hb_000256_020 Hb_009367_080--Hb_000256_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.923552 1.15037 0.72035 0.300169 0.255445 0.63714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0503913 0.118943 1.34951 0.607893 0.584724

CAGE analysis