Hb_000358_040

Information

Type -
Description -
Location Contig358: 46131-52382
Sequence    

Annotation

kegg
ID pop:POPTR_0001s21690g
description POPTRDRAFT_1067428; hypothetical protein
nr
ID XP_012071360.1
description PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic [Jatropha curcas]
swissprot
ID Q9LU85
description Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana GN=PAP4 PE=2 SV=1
trembl
ID A0A067L464
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05046 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36873: 47073-48184 , PASA_asmbl_36874: 46163-48184 , PASA_asmbl_36875: 46548-48218 , PASA_asmbl_36876: 46328-46917 , PASA_asmbl_36877: 46134-46866 , PASA_asmbl_36879: 49400-49661 , PASA_asmbl_36880: 49851-51185 , PASA_asmbl_36881: 51555-52091
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000358_040 0.0 - - PREDICTED: probable plastid-lipid-associated protein 4, chloroplastic [Jatropha curcas]
2 Hb_002928_030 0.0825474592 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
3 Hb_004629_030 0.0830280694 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_001649_030 0.089912513 - - PREDICTED: peptide deformylase 1B, chloroplastic [Jatropha curcas]
5 Hb_000260_710 0.092005405 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
6 Hb_000482_050 0.0947880563 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
7 Hb_003376_390 0.0970006606 - - PREDICTED: 29 kDa ribonucleoprotein A, chloroplastic [Jatropha curcas]
8 Hb_009288_040 0.0973065188 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]
9 Hb_000665_270 0.0985090808 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
10 Hb_004871_010 0.1007074713 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
11 Hb_025194_090 0.104458132 - - coproporphyrinogen III oxidase, putative [Ricinus communis]
12 Hb_005116_100 0.1104079699 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]
13 Hb_002005_040 0.1107157562 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_000336_200 0.1114564232 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
15 Hb_000537_070 0.1137001573 - - PREDICTED: pentatricopeptide repeat-containing protein At5g25630 [Jatropha curcas]
16 Hb_000617_250 0.1137249817 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
17 Hb_001472_160 0.1140183342 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
18 Hb_007576_180 0.114368628 - - PREDICTED: probable protein phosphatase 2C 62 isoform X5 [Jatropha curcas]
19 Hb_003029_020 0.1143781199 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
20 Hb_003462_060 0.1145837866 - - PREDICTED: ABC transporter G family member 24-like [Jatropha curcas]

Gene co-expression network

sample Hb_000358_040 Hb_000358_040 Hb_002928_030 Hb_002928_030 Hb_000358_040--Hb_002928_030 Hb_004629_030 Hb_004629_030 Hb_000358_040--Hb_004629_030 Hb_001649_030 Hb_001649_030 Hb_000358_040--Hb_001649_030 Hb_000260_710 Hb_000260_710 Hb_000358_040--Hb_000260_710 Hb_000482_050 Hb_000482_050 Hb_000358_040--Hb_000482_050 Hb_003376_390 Hb_003376_390 Hb_000358_040--Hb_003376_390 Hb_002928_030--Hb_001649_030 Hb_002928_030--Hb_004629_030 Hb_002928_030--Hb_003376_390 Hb_025194_090 Hb_025194_090 Hb_002928_030--Hb_025194_090 Hb_004871_010 Hb_004871_010 Hb_002928_030--Hb_004871_010 Hb_004629_030--Hb_000482_050 Hb_068804_090 Hb_068804_090 Hb_004629_030--Hb_068804_090 Hb_000748_090 Hb_000748_090 Hb_004629_030--Hb_000748_090 Hb_007012_030 Hb_007012_030 Hb_004629_030--Hb_007012_030 Hb_000617_250 Hb_000617_250 Hb_004629_030--Hb_000617_250 Hb_001269_500 Hb_001269_500 Hb_001649_030--Hb_001269_500 Hb_000665_270 Hb_000665_270 Hb_001649_030--Hb_000665_270 Hb_003752_090 Hb_003752_090 Hb_001649_030--Hb_003752_090 Hb_001649_030--Hb_003376_390 Hb_000260_710--Hb_004871_010 Hb_031042_060 Hb_031042_060 Hb_000260_710--Hb_031042_060 Hb_001789_160 Hb_001789_160 Hb_000260_710--Hb_001789_160 Hb_003462_060 Hb_003462_060 Hb_000260_710--Hb_003462_060 Hb_001472_160 Hb_001472_160 Hb_000260_710--Hb_001472_160 Hb_011861_050 Hb_011861_050 Hb_000260_710--Hb_011861_050 Hb_002828_060 Hb_002828_060 Hb_000482_050--Hb_002828_060 Hb_001396_020 Hb_001396_020 Hb_000482_050--Hb_001396_020 Hb_002600_070 Hb_002600_070 Hb_000482_050--Hb_002600_070 Hb_000482_050--Hb_007012_030 Hb_000482_050--Hb_000748_090 Hb_003376_390--Hb_004871_010 Hb_172632_060 Hb_172632_060 Hb_003376_390--Hb_172632_060 Hb_000574_470 Hb_000574_470 Hb_003376_390--Hb_000574_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.16816 10.8199 22.8497 11.0521 4.32992 7.17586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.81304 4.87983 1.90708 6.54607 33.2895

CAGE analysis