Hb_000358_090

Information

Type -
Description -
Location Contig358: 123502-124701
Sequence    

Annotation

kegg
ID rcu:RCOM_0065560
description zinc finger protein, putative
nr
ID XP_002531415.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q6DIP3
description E3 ubiquitin-protein ligase RNF126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1
trembl
ID B9SZJ6
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0065560 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase ring1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36889: 124004-125272
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000358_090 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_001657_020 0.0929102862 - - heat shock family protein [Populus trichocarpa]
3 Hb_003152_020 0.0985782752 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
4 Hb_004787_120 0.1013993073 - - PREDICTED: transcription factor TCP14 [Jatropha curcas]
5 Hb_001433_090 0.1023968157 - - Pectinesterase PPE8B precursor, putative [Ricinus communis]
6 Hb_000083_210 0.1036663631 - - Major facilitator superfamily protein, putative [Theobroma cacao]
7 Hb_001541_200 0.1037773588 - - PREDICTED: BTB/POZ domain-containing protein At1g67900-like isoform X1 [Citrus sinensis]
8 Hb_005183_050 0.1042762029 - - hypothetical protein RCOM_1590900 [Ricinus communis]
9 Hb_005295_020 0.1058159605 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
10 Hb_000017_180 0.109329349 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
11 Hb_005842_010 0.1102289974 - - nitrate transporter, putative [Ricinus communis]
12 Hb_010589_010 0.1105629866 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
13 Hb_000002_110 0.1118178079 - - hypothetical protein EUGRSUZ_B02140 [Eucalyptus grandis]
14 Hb_001512_130 0.1123908075 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
15 Hb_001278_020 0.1129786356 - - sucrose synthase 6 [Hevea brasiliensis]
16 Hb_000661_270 0.1134647787 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
17 Hb_001500_130 0.1142131449 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
18 Hb_000749_300 0.115189677 - - PREDICTED: uncharacterized protein LOC105129180 [Populus euphratica]
19 Hb_002336_050 0.1162096669 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_005532_030 0.116215775 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000358_090 Hb_000358_090 Hb_001657_020 Hb_001657_020 Hb_000358_090--Hb_001657_020 Hb_003152_020 Hb_003152_020 Hb_000358_090--Hb_003152_020 Hb_004787_120 Hb_004787_120 Hb_000358_090--Hb_004787_120 Hb_001433_090 Hb_001433_090 Hb_000358_090--Hb_001433_090 Hb_000083_210 Hb_000083_210 Hb_000358_090--Hb_000083_210 Hb_001541_200 Hb_001541_200 Hb_000358_090--Hb_001541_200 Hb_001657_020--Hb_001541_200 Hb_001657_020--Hb_001433_090 Hb_020956_030 Hb_020956_030 Hb_001657_020--Hb_020956_030 Hb_005183_050 Hb_005183_050 Hb_001657_020--Hb_005183_050 Hb_001657_020--Hb_003152_020 Hb_026549_060 Hb_026549_060 Hb_001657_020--Hb_026549_060 Hb_001397_020 Hb_001397_020 Hb_003152_020--Hb_001397_020 Hb_007163_110 Hb_007163_110 Hb_003152_020--Hb_007163_110 Hb_136408_040 Hb_136408_040 Hb_003152_020--Hb_136408_040 Hb_010589_010 Hb_010589_010 Hb_003152_020--Hb_010589_010 Hb_002809_180 Hb_002809_180 Hb_003152_020--Hb_002809_180 Hb_005000_150 Hb_005000_150 Hb_003152_020--Hb_005000_150 Hb_020375_010 Hb_020375_010 Hb_004787_120--Hb_020375_010 Hb_000813_070 Hb_000813_070 Hb_004787_120--Hb_000813_070 Hb_001514_050 Hb_001514_050 Hb_004787_120--Hb_001514_050 Hb_002151_070 Hb_002151_070 Hb_004787_120--Hb_002151_070 Hb_000000_050 Hb_000000_050 Hb_004787_120--Hb_000000_050 Hb_001433_090--Hb_026549_060 Hb_000002_110 Hb_000002_110 Hb_001433_090--Hb_000002_110 Hb_001433_090--Hb_010589_010 Hb_001433_090--Hb_005183_050 Hb_001500_130 Hb_001500_130 Hb_001433_090--Hb_001500_130 Hb_001433_090--Hb_020956_030 Hb_000749_300 Hb_000749_300 Hb_000083_210--Hb_000749_300 Hb_000083_210--Hb_001500_130 Hb_005010_030 Hb_005010_030 Hb_000083_210--Hb_005010_030 Hb_002246_030 Hb_002246_030 Hb_000083_210--Hb_002246_030 Hb_001047_210 Hb_001047_210 Hb_000083_210--Hb_001047_210 Hb_000083_210--Hb_001433_090 Hb_001541_200--Hb_026549_060 Hb_001541_200--Hb_020956_030 Hb_001541_200--Hb_001433_090 Hb_001541_200--Hb_005183_050 Hb_003162_060 Hb_003162_060 Hb_001541_200--Hb_003162_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.023451 0.0626865 0.218083 0.535425 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0170216 0.603303

CAGE analysis