Hb_000358_100

Information

Type -
Description -
Location Contig358: 126296-132092
Sequence    

Annotation

kegg
ID rcu:RCOM_0065600
description hypothetical protein
nr
ID XP_012071350.1
description PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KRP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05038 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36890: 126248-128809 , PASA_asmbl_36892: 129623-129905
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000358_100 0.0 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
2 Hb_000020_160 0.0469879179 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
3 Hb_000284_230 0.0615539361 - - PREDICTED: uncharacterized protein At5g49945-like [Jatropha curcas]
4 Hb_000359_190 0.0616552371 - - PREDICTED: protein VACUOLELESS1 [Nicotiana sylvestris]
5 Hb_000066_150 0.0686678845 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
6 Hb_007245_020 0.0696258834 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
7 Hb_000172_340 0.0741421127 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
8 Hb_012055_110 0.0743642018 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
9 Hb_001059_130 0.0780321329 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
10 Hb_044486_020 0.0782026154 - - CASTOR protein [Glycine max]
11 Hb_000103_290 0.0786979549 - - PREDICTED: dymeclin isoform X1 [Jatropha curcas]
12 Hb_000336_020 0.0787691753 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
13 Hb_001194_020 0.079200104 - - microtubule associated protein xmap215, putative [Ricinus communis]
14 Hb_000358_220 0.0792352685 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
15 Hb_009252_050 0.0811499316 - - protein binding protein, putative [Ricinus communis]
16 Hb_170077_010 0.0818664929 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
17 Hb_024650_080 0.0825170867 - - PREDICTED: BTB/POZ domain-containing protein At3g09030 [Jatropha curcas]
18 Hb_123531_010 0.0826537636 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
19 Hb_000260_780 0.0827747298 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase HRD1B-like [Jatropha curcas]
20 Hb_010315_020 0.0828661946 - - PREDICTED: uncharacterized protein LOC105640834 [Jatropha curcas]

Gene co-expression network

sample Hb_000358_100 Hb_000358_100 Hb_000020_160 Hb_000020_160 Hb_000358_100--Hb_000020_160 Hb_000284_230 Hb_000284_230 Hb_000358_100--Hb_000284_230 Hb_000359_190 Hb_000359_190 Hb_000358_100--Hb_000359_190 Hb_000066_150 Hb_000066_150 Hb_000358_100--Hb_000066_150 Hb_007245_020 Hb_007245_020 Hb_000358_100--Hb_007245_020 Hb_000172_340 Hb_000172_340 Hb_000358_100--Hb_000172_340 Hb_000358_220 Hb_000358_220 Hb_000020_160--Hb_000358_220 Hb_044486_020 Hb_044486_020 Hb_000020_160--Hb_044486_020 Hb_024650_080 Hb_024650_080 Hb_000020_160--Hb_024650_080 Hb_000020_160--Hb_000172_340 Hb_170077_010 Hb_170077_010 Hb_000020_160--Hb_170077_010 Hb_002475_040 Hb_002475_040 Hb_000284_230--Hb_002475_040 Hb_001194_020 Hb_001194_020 Hb_000284_230--Hb_001194_020 Hb_008397_010 Hb_008397_010 Hb_000284_230--Hb_008397_010 Hb_073973_150 Hb_073973_150 Hb_000284_230--Hb_073973_150 Hb_006355_020 Hb_006355_020 Hb_000284_230--Hb_006355_020 Hb_000359_190--Hb_044486_020 Hb_000359_190--Hb_000020_160 Hb_183086_030 Hb_183086_030 Hb_000359_190--Hb_183086_030 Hb_021977_010 Hb_021977_010 Hb_000359_190--Hb_021977_010 Hb_000103_290 Hb_000103_290 Hb_000359_190--Hb_000103_290 Hb_012055_110 Hb_012055_110 Hb_000066_150--Hb_012055_110 Hb_002007_110 Hb_002007_110 Hb_000066_150--Hb_002007_110 Hb_010315_020 Hb_010315_020 Hb_000066_150--Hb_010315_020 Hb_000066_150--Hb_000358_220 Hb_000066_150--Hb_000172_340 Hb_004032_200 Hb_004032_200 Hb_000066_150--Hb_004032_200 Hb_002357_070 Hb_002357_070 Hb_007245_020--Hb_002357_070 Hb_123531_010 Hb_123531_010 Hb_007245_020--Hb_123531_010 Hb_006478_030 Hb_006478_030 Hb_007245_020--Hb_006478_030 Hb_007245_020--Hb_000172_340 Hb_060980_010 Hb_060980_010 Hb_007245_020--Hb_060980_010 Hb_007245_020--Hb_000103_290 Hb_001904_030 Hb_001904_030 Hb_000172_340--Hb_001904_030 Hb_005832_010 Hb_005832_010 Hb_000172_340--Hb_005832_010 Hb_002005_030 Hb_002005_030 Hb_000172_340--Hb_002005_030 Hb_000172_340--Hb_123531_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.93806 6.72692 4.5946 6.99883 4.64508 3.54797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.64677 1.94347 1.69672 5.0376 6.81343

CAGE analysis