Hb_000358_150

Information

Type -
Description -
Location Contig358: 173058-183578
Sequence    

Annotation

kegg
ID rcu:RCOM_1050610
description catalytic, putative
nr
ID CAN76867.1
description hypothetical protein VITISV_012309 [Vitis vinifera]
swissprot
ID Q9FFN2
description Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2
trembl
ID A5BGJ5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012309 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36895: 175245-176202 , PASA_asmbl_36896: 176205-176770 , PASA_asmbl_36897: 177881-183692 , PASA_asmbl_36898: 181512-181860
cDNA
(Sanger)
(ID:Location)		 013_O12.ab1: 177939-178591

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000358_150 0.0 - - hypothetical protein VITISV_012309 [Vitis vinifera]
2 Hb_001252_080 0.0575412466 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]
3 Hb_001369_420 0.0701995067 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
4 Hb_000676_110 0.0702743357 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
5 Hb_001493_030 0.0792929738 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
6 Hb_000933_090 0.0841286542 - - PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]
7 Hb_000051_070 0.0858779913 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
8 Hb_023344_030 0.0866449191 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
9 Hb_008695_180 0.0870967608 - - eukaryotic translation initiation factor [Hevea brasiliensis]
10 Hb_000103_180 0.0878275113 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
11 Hb_003506_080 0.0878486153 - - dipeptidyl peptidase IV, putative [Ricinus communis]
12 Hb_000207_390 0.0893574946 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
13 Hb_000618_030 0.0896278346 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
14 Hb_000796_220 0.0917924133 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
15 Hb_003090_080 0.0921843606 transcription factor TF Family: MYB PREDICTED: myb-like protein B [Jatropha curcas]
16 Hb_006827_020 0.0936272877 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007059_010 0.0949277664 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
18 Hb_004724_200 0.0952552945 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
19 Hb_028639_010 0.0961862094 - - transporter, putative [Ricinus communis]
20 Hb_106371_010 0.0962838594 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000358_150 Hb_000358_150 Hb_001252_080 Hb_001252_080 Hb_000358_150--Hb_001252_080 Hb_001369_420 Hb_001369_420 Hb_000358_150--Hb_001369_420 Hb_000676_110 Hb_000676_110 Hb_000358_150--Hb_000676_110 Hb_001493_030 Hb_001493_030 Hb_000358_150--Hb_001493_030 Hb_000933_090 Hb_000933_090 Hb_000358_150--Hb_000933_090 Hb_000051_070 Hb_000051_070 Hb_000358_150--Hb_000051_070 Hb_002609_110 Hb_002609_110 Hb_001252_080--Hb_002609_110 Hb_001252_080--Hb_000676_110 Hb_000057_040 Hb_000057_040 Hb_001252_080--Hb_000057_040 Hb_001252_080--Hb_001369_420 Hb_000207_390 Hb_000207_390 Hb_001252_080--Hb_000207_390 Hb_000025_140 Hb_000025_140 Hb_001369_420--Hb_000025_140 Hb_001369_420--Hb_000676_110 Hb_008695_180 Hb_008695_180 Hb_001369_420--Hb_008695_180 Hb_001369_420--Hb_000051_070 Hb_001369_420--Hb_001493_030 Hb_000676_110--Hb_008695_180 Hb_001143_160 Hb_001143_160 Hb_000676_110--Hb_001143_160 Hb_000676_110--Hb_001493_030 Hb_000700_140 Hb_000700_140 Hb_001493_030--Hb_000700_140 Hb_007317_110 Hb_007317_110 Hb_001493_030--Hb_007317_110 Hb_006827_020 Hb_006827_020 Hb_001493_030--Hb_006827_020 Hb_000152_380 Hb_000152_380 Hb_001493_030--Hb_000152_380 Hb_004221_020 Hb_004221_020 Hb_001493_030--Hb_004221_020 Hb_000618_030 Hb_000618_030 Hb_001493_030--Hb_000618_030 Hb_007044_080 Hb_007044_080 Hb_000933_090--Hb_007044_080 Hb_004117_130 Hb_004117_130 Hb_000933_090--Hb_004117_130 Hb_004837_190 Hb_004837_190 Hb_000933_090--Hb_004837_190 Hb_000933_090--Hb_000051_070 Hb_000933_090--Hb_001369_420 Hb_001006_140 Hb_001006_140 Hb_000051_070--Hb_001006_140 Hb_000051_070--Hb_000152_380 Hb_000815_210 Hb_000815_210 Hb_000051_070--Hb_000815_210 Hb_005276_210 Hb_005276_210 Hb_000051_070--Hb_005276_210 Hb_003952_070 Hb_003952_070 Hb_000051_070--Hb_003952_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.8945 2.08964 1.88824 2.78392 7.88958 6.15111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.60767 3.56059 5.44375 3.89136 2.14692

CAGE analysis