Hb_000358_160

Information

Type -
Description -
Location Contig358: 185526-191702
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09260g
description POPTRDRAFT_261995; hypothetical protein
nr
ID XP_012076769.1
description PREDICTED: uncharacterized protein LOC105637769 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KN96
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07296 PE=4 SV=1
Gene Ontology
ID GO:0008374
description alpha beta-hydrolases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36899: 184636-191770 , PASA_asmbl_36900: 185541-191770 , PASA_asmbl_36901: 186564-191770 , PASA_asmbl_36902: 184762-185124
cDNA
(Sanger)
(ID:Location)		 050_E17.ab1: 184636-188263

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000358_160 0.0 - - PREDICTED: uncharacterized protein LOC105637769 isoform X1 [Jatropha curcas]
2 Hb_092516_010 0.0614988803 - - hypothetical protein JCGZ_12248 [Jatropha curcas]
3 Hb_001655_080 0.0693278495 - - Purple acid phosphatase precursor, putative [Ricinus communis]
4 Hb_027684_010 0.0885448841 - - hypothetical protein RCOM_0504250 [Ricinus communis]
5 Hb_021443_060 0.0885876444 - - PTH-1 family protein [Populus trichocarpa]
6 Hb_000313_250 0.0888294899 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
7 Hb_000345_400 0.0914743598 - - conserved hypothetical protein [Ricinus communis]
8 Hb_110266_010 0.0919186484 - - PREDICTED: pentatricopeptide repeat-containing protein At5g21222-like [Jatropha curcas]
9 Hb_000123_360 0.0937574086 - - PREDICTED: photosynthetic NDH subunit of lumenal location 1, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_002007_120 0.0945948235 - - PREDICTED: psbP domain-containing protein 7, chloroplastic [Jatropha curcas]
11 Hb_001442_050 0.0951773746 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Jatropha curcas]
12 Hb_002066_100 0.1022469465 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
13 Hb_001638_190 0.102249592 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
14 Hb_002710_040 0.1035670446 - - PREDICTED: cyclin-D3-3-like [Jatropha curcas]
15 Hb_163950_090 0.1055146685 - - PREDICTED: traB domain-containing protein isoform X1 [Jatropha curcas]
16 Hb_004102_060 0.1058512 - - JHL25H03.11 [Jatropha curcas]
17 Hb_000294_020 0.1117421891 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
18 Hb_000890_170 0.1156766307 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
19 Hb_000282_020 0.1164782531 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
20 Hb_002843_130 0.1172826347 - - PREDICTED: GRF1-interacting factor 2-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000358_160 Hb_000358_160 Hb_092516_010 Hb_092516_010 Hb_000358_160--Hb_092516_010 Hb_001655_080 Hb_001655_080 Hb_000358_160--Hb_001655_080 Hb_027684_010 Hb_027684_010 Hb_000358_160--Hb_027684_010 Hb_021443_060 Hb_021443_060 Hb_000358_160--Hb_021443_060 Hb_000313_250 Hb_000313_250 Hb_000358_160--Hb_000313_250 Hb_000345_400 Hb_000345_400 Hb_000358_160--Hb_000345_400 Hb_000294_020 Hb_000294_020 Hb_092516_010--Hb_000294_020 Hb_092516_010--Hb_021443_060 Hb_110266_010 Hb_110266_010 Hb_092516_010--Hb_110266_010 Hb_092516_010--Hb_000313_250 Hb_092516_010--Hb_001655_080 Hb_001655_080--Hb_027684_010 Hb_046590_010 Hb_046590_010 Hb_001655_080--Hb_046590_010 Hb_001269_060 Hb_001269_060 Hb_001655_080--Hb_001269_060 Hb_001638_190 Hb_001638_190 Hb_001655_080--Hb_001638_190 Hb_000722_030 Hb_000722_030 Hb_027684_010--Hb_000722_030 Hb_002066_100 Hb_002066_100 Hb_027684_010--Hb_002066_100 Hb_002518_040 Hb_002518_040 Hb_027684_010--Hb_002518_040 Hb_027684_010--Hb_021443_060 Hb_021443_060--Hb_000313_250 Hb_174899_010 Hb_174899_010 Hb_021443_060--Hb_174899_010 Hb_023582_010 Hb_023582_010 Hb_021443_060--Hb_023582_010 Hb_000890_170 Hb_000890_170 Hb_000313_250--Hb_000890_170 Hb_000313_250--Hb_110266_010 Hb_002007_120 Hb_002007_120 Hb_000313_250--Hb_002007_120 Hb_000005_060 Hb_000005_060 Hb_000313_250--Hb_000005_060 Hb_000345_400--Hb_001638_190 Hb_000345_400--Hb_000294_020 Hb_001442_050 Hb_001442_050 Hb_000345_400--Hb_001442_050 Hb_000345_400--Hb_092516_010 Hb_000345_400--Hb_110266_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0914867 0.975441 13.944 3.85925 0.0526061 0.0921729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.147164 0.11579 0.0365186 0.614675 7.56843

CAGE analysis