Hb_000358_210

Information

Type -
Description -
Location Contig358: 244375-254788
Sequence    

Annotation

kegg
ID rcu:RCOM_1050370
description oligosaccharyl transferase, putative (EC:2.4.1.119)
nr
ID XP_002514244.1
description oligosaccharyl transferase, putative [Ricinus communis]
swissprot
ID Q93ZY3
description Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A OS=Arabidopsis thaliana GN=STT3A PE=2 SV=1
trembl
ID B9RKK0
description Oligosaccharyl transferase, putative OS=Ricinus communis GN=RCOM_1050370 PE=4 SV=1
Gene Ontology
ID GO:0005886
description dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit stt3a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36905: 244381-254671 , PASA_asmbl_36906: 244077-254671 , PASA_asmbl_36907: 244000-244784
cDNA
(Sanger)
(ID:Location)		 005_O23.ab1: 245946-249811

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000358_210 0.0 - - oligosaccharyl transferase, putative [Ricinus communis]
2 Hb_000265_070 0.0604720162 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
3 Hb_002392_020 0.0715797342 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
4 Hb_070624_010 0.0726131599 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
5 Hb_000926_060 0.0830632531 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003490_060 0.0847997372 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
7 Hb_002284_100 0.0879800385 - - ribophorin, putative [Ricinus communis]
8 Hb_000862_100 0.0881590213 - - PREDICTED: plastid division protein CDP1, chloroplastic [Jatropha curcas]
9 Hb_001279_090 0.0885140897 - - PREDICTED: uncharacterized protein LOC105633322 [Jatropha curcas]
10 Hb_009524_030 0.0910435015 - - PREDICTED: uncharacterized protein LOC105650971 [Jatropha curcas]
11 Hb_002828_060 0.0923672011 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
12 Hb_068079_010 0.0929239546 - - -
13 Hb_019654_020 0.0934780643 - - PREDICTED: T-complex protein 1 subunit beta [Jatropha curcas]
14 Hb_003355_010 0.0941927888 - - Heat shock 70 kDa protein, putative [Ricinus communis]
15 Hb_000645_180 0.0955278142 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
16 Hb_007741_120 0.097265551 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
17 Hb_001053_080 0.0972700215 - - OsCesA3 protein [Morus notabilis]
18 Hb_001434_020 0.0979156504 - - hypothetical protein RCOM_0841800 [Ricinus communis]
19 Hb_106890_010 0.0990715943 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
20 Hb_024570_040 0.1013966751 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000358_210 Hb_000358_210 Hb_000265_070 Hb_000265_070 Hb_000358_210--Hb_000265_070 Hb_002392_020 Hb_002392_020 Hb_000358_210--Hb_002392_020 Hb_070624_010 Hb_070624_010 Hb_000358_210--Hb_070624_010 Hb_000926_060 Hb_000926_060 Hb_000358_210--Hb_000926_060 Hb_003490_060 Hb_003490_060 Hb_000358_210--Hb_003490_060 Hb_002284_100 Hb_002284_100 Hb_000358_210--Hb_002284_100 Hb_009524_030 Hb_009524_030 Hb_000265_070--Hb_009524_030 Hb_000265_070--Hb_070624_010 Hb_000265_070--Hb_002392_020 Hb_007943_150 Hb_007943_150 Hb_000265_070--Hb_007943_150 Hb_000645_180 Hb_000645_180 Hb_000265_070--Hb_000645_180 Hb_002392_020--Hb_003490_060 Hb_001434_020 Hb_001434_020 Hb_002392_020--Hb_001434_020 Hb_002392_020--Hb_007943_150 Hb_002392_020--Hb_002284_100 Hb_002232_490 Hb_002232_490 Hb_002392_020--Hb_002232_490 Hb_070624_010--Hb_000926_060 Hb_003680_220 Hb_003680_220 Hb_070624_010--Hb_003680_220 Hb_070624_010--Hb_000645_180 Hb_029695_070 Hb_029695_070 Hb_070624_010--Hb_029695_070 Hb_000579_080 Hb_000579_080 Hb_000926_060--Hb_000579_080 Hb_000926_060--Hb_003680_220 Hb_000500_220 Hb_000500_220 Hb_000926_060--Hb_000500_220 Hb_008725_270 Hb_008725_270 Hb_000926_060--Hb_008725_270 Hb_002828_060 Hb_002828_060 Hb_003490_060--Hb_002828_060 Hb_106890_010 Hb_106890_010 Hb_003490_060--Hb_106890_010 Hb_000976_110 Hb_000976_110 Hb_003490_060--Hb_000976_110 Hb_000109_260 Hb_000109_260 Hb_003490_060--Hb_000109_260 Hb_003355_010 Hb_003355_010 Hb_003490_060--Hb_003355_010 Hb_002552_040 Hb_002552_040 Hb_002284_100--Hb_002552_040 Hb_011214_110 Hb_011214_110 Hb_002284_100--Hb_011214_110 Hb_005846_050 Hb_005846_050 Hb_002284_100--Hb_005846_050 Hb_019654_020 Hb_019654_020 Hb_002284_100--Hb_019654_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4986 9.80238 35.1905 24.7827 13.3424 11.0116
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.28805 6.369 7.47565 24.4133 32.3653

CAGE analysis