Hb_000358_220

Information

Type -
Description -
Location Contig358: 254682-258370
Sequence    

Annotation

kegg
ID csv:101211333
description SNW domain-containing protein 1-like
nr
ID XP_012088232.1
description PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
swissprot
ID O80653
description SNW/SKI-interacting protein OS=Arabidopsis thaliana GN=SKIP PE=1 SV=1
trembl
ID A0A067JJL8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25749 PE=4 SV=1
Gene Ontology
ID GO:0005681
description snw ski-interacting

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36908: 255840-258368
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000358_220 0.0 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]
2 Hb_011457_140 0.054452005 - - PREDICTED: uncharacterized protein LOC105649947 [Jatropha curcas]
3 Hb_003929_210 0.0572950312 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
4 Hb_008642_060 0.0580507483 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
5 Hb_170077_010 0.0586502636 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
6 Hb_000066_150 0.0595570212 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
7 Hb_000684_350 0.062665374 - - PREDICTED: uncharacterized protein LOC105642163 isoform X1 [Jatropha curcas]
8 Hb_023344_140 0.0634295923 - - PREDICTED: WD repeat-containing protein 70 [Jatropha curcas]
9 Hb_002461_020 0.0639130206 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
10 Hb_012055_110 0.064116496 - - tetratricopeptide repeat protein, tpr, putative [Ricinus communis]
11 Hb_000110_350 0.06452043 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
12 Hb_003939_060 0.0672093145 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000300_030 0.0682425499 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
14 Hb_160608_010 0.0688119371 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
15 Hb_000996_020 0.0690421096 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
16 Hb_002007_110 0.0702965202 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
17 Hb_000020_160 0.0707550839 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
18 Hb_000260_760 0.0711809159 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
19 Hb_003661_010 0.0724306945 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
20 Hb_000179_190 0.0725178245 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_000358_220 Hb_000358_220 Hb_011457_140 Hb_011457_140 Hb_000358_220--Hb_011457_140 Hb_003929_210 Hb_003929_210 Hb_000358_220--Hb_003929_210 Hb_008642_060 Hb_008642_060 Hb_000358_220--Hb_008642_060 Hb_170077_010 Hb_170077_010 Hb_000358_220--Hb_170077_010 Hb_000066_150 Hb_000066_150 Hb_000358_220--Hb_000066_150 Hb_000684_350 Hb_000684_350 Hb_000358_220--Hb_000684_350 Hb_011457_140--Hb_008642_060 Hb_000300_030 Hb_000300_030 Hb_011457_140--Hb_000300_030 Hb_000008_280 Hb_000008_280 Hb_011457_140--Hb_000008_280 Hb_010315_020 Hb_010315_020 Hb_011457_140--Hb_010315_020 Hb_000173_160 Hb_000173_160 Hb_011457_140--Hb_000173_160 Hb_003939_060 Hb_003939_060 Hb_003929_210--Hb_003939_060 Hb_000110_350 Hb_000110_350 Hb_003929_210--Hb_000110_350 Hb_033312_130 Hb_033312_130 Hb_003929_210--Hb_033312_130 Hb_000996_020 Hb_000996_020 Hb_003929_210--Hb_000996_020 Hb_002768_050 Hb_002768_050 Hb_003929_210--Hb_002768_050 Hb_008642_060--Hb_003929_210 Hb_000179_190 Hb_000179_190 Hb_008642_060--Hb_000179_190 Hb_008642_060--Hb_000008_280 Hb_000030_140 Hb_000030_140 Hb_008642_060--Hb_000030_140 Hb_170077_010--Hb_000110_350 Hb_005403_010 Hb_005403_010 Hb_170077_010--Hb_005403_010 Hb_023344_140 Hb_023344_140 Hb_170077_010--Hb_023344_140 Hb_170077_010--Hb_000996_020 Hb_002461_020 Hb_002461_020 Hb_170077_010--Hb_002461_020 Hb_012055_110 Hb_012055_110 Hb_000066_150--Hb_012055_110 Hb_002007_110 Hb_002007_110 Hb_000066_150--Hb_002007_110 Hb_000066_150--Hb_010315_020 Hb_000172_340 Hb_000172_340 Hb_000066_150--Hb_000172_340 Hb_004032_200 Hb_004032_200 Hb_000066_150--Hb_004032_200 Hb_000059_230 Hb_000059_230 Hb_000684_350--Hb_000059_230 Hb_000684_350--Hb_012055_110 Hb_000684_350--Hb_000066_150 Hb_006839_010 Hb_006839_010 Hb_000684_350--Hb_006839_010 Hb_000958_050 Hb_000958_050 Hb_000684_350--Hb_000958_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.5375 65.1358 50.4847 49.5605 29.1359 32.7094
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.8223 13.5313 22.1325 41.6262 65.0616

CAGE analysis