Hb_000358_250

Information

Type -
Description -
Location Contig358: 277749-286688
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09330g
description POPTRDRAFT_835890; HOBBIT family protein
nr
ID XP_012076778.1
description PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
swissprot
ID Q8LGU6
description Cell division cycle protein 27 homolog B OS=Arabidopsis thaliana GN=CDC27B PE=1 SV=1
trembl
ID A0A067KPL9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07300 PE=4 SV=1
Gene Ontology
ID GO:0005819
description cell division cycle protein 27 homolog b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36911: 279710-280825 , PASA_asmbl_36912: 282614-287054
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000358_250 0.0 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
2 Hb_002477_130 0.0726317089 - - conserved hypothetical protein [Ricinus communis]
3 Hb_031939_010 0.0750527517 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
4 Hb_000116_180 0.0786762982 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
5 Hb_000538_100 0.0812792308 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000429_200 0.08229068 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
7 Hb_003849_250 0.0828042504 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
8 Hb_004837_190 0.0828347973 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
9 Hb_054865_100 0.0829851249 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
10 Hb_000866_470 0.0830858244 - - PREDICTED: uncharacterized protein LOC105643015 [Jatropha curcas]
11 Hb_008406_110 0.0839873704 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
12 Hb_005895_040 0.0845411094 - - PREDICTED: tRNA threonylcarbamoyladenosine dehydratase [Jatropha curcas]
13 Hb_005618_160 0.0846878853 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
14 Hb_001014_010 0.0849606022 - - PREDICTED: uncharacterized protein LOC105647311 [Jatropha curcas]
15 Hb_075481_030 0.0861103971 - - PREDICTED: DNA-binding protein RHL1 isoform X3 [Jatropha curcas]
16 Hb_003788_050 0.08665286 - - PREDICTED: interferon-induced guanylate-binding protein 2-like [Jatropha curcas]
17 Hb_066182_010 0.0867432272 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
18 Hb_000913_050 0.0876122377 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
19 Hb_000174_110 0.0879156568 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
20 Hb_001357_380 0.089276117 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000358_250 Hb_000358_250 Hb_002477_130 Hb_002477_130 Hb_000358_250--Hb_002477_130 Hb_031939_010 Hb_031939_010 Hb_000358_250--Hb_031939_010 Hb_000116_180 Hb_000116_180 Hb_000358_250--Hb_000116_180 Hb_000538_100 Hb_000538_100 Hb_000358_250--Hb_000538_100 Hb_000429_200 Hb_000429_200 Hb_000358_250--Hb_000429_200 Hb_003849_250 Hb_003849_250 Hb_000358_250--Hb_003849_250 Hb_000365_140 Hb_000365_140 Hb_002477_130--Hb_000365_140 Hb_000424_010 Hb_000424_010 Hb_002477_130--Hb_000424_010 Hb_005895_040 Hb_005895_040 Hb_002477_130--Hb_005895_040 Hb_000640_220 Hb_000640_220 Hb_002477_130--Hb_000640_220 Hb_001771_120 Hb_001771_120 Hb_002477_130--Hb_001771_120 Hb_011942_080 Hb_011942_080 Hb_031939_010--Hb_011942_080 Hb_008887_050 Hb_008887_050 Hb_031939_010--Hb_008887_050 Hb_000290_020 Hb_000290_020 Hb_031939_010--Hb_000290_020 Hb_003044_100 Hb_003044_100 Hb_031939_010--Hb_003044_100 Hb_001014_010 Hb_001014_010 Hb_031939_010--Hb_001014_010 Hb_005245_130 Hb_005245_130 Hb_031939_010--Hb_005245_130 Hb_000207_310 Hb_000207_310 Hb_000116_180--Hb_000207_310 Hb_000913_050 Hb_000913_050 Hb_000116_180--Hb_000913_050 Hb_000794_050 Hb_000794_050 Hb_000116_180--Hb_000794_050 Hb_000926_190 Hb_000926_190 Hb_000116_180--Hb_000926_190 Hb_000116_180--Hb_003849_250 Hb_000866_470 Hb_000866_470 Hb_000116_180--Hb_000866_470 Hb_006827_020 Hb_006827_020 Hb_000538_100--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000538_100--Hb_007317_110 Hb_006252_040 Hb_006252_040 Hb_000538_100--Hb_006252_040 Hb_103012_010 Hb_103012_010 Hb_000538_100--Hb_103012_010 Hb_002304_090 Hb_002304_090 Hb_000538_100--Hb_002304_090 Hb_003952_070 Hb_003952_070 Hb_000538_100--Hb_003952_070 Hb_000522_090 Hb_000522_090 Hb_000429_200--Hb_000522_090 Hb_007044_080 Hb_007044_080 Hb_000429_200--Hb_007044_080 Hb_000429_200--Hb_000116_180 Hb_000803_300 Hb_000803_300 Hb_000429_200--Hb_000803_300 Hb_000179_020 Hb_000179_020 Hb_000429_200--Hb_000179_020 Hb_008406_110 Hb_008406_110 Hb_003849_250--Hb_008406_110 Hb_000334_270 Hb_000334_270 Hb_003849_250--Hb_000334_270 Hb_003849_250--Hb_000866_470 Hb_001828_160 Hb_001828_160 Hb_003849_250--Hb_001828_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.007 6.30172 5.97228 5.27394 18.9714 14.2304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4449 8.51395 5.16817 5.38976 4.35914

CAGE analysis