Hb_000358_260

Information

Type -
Description -
Location Contig358: 289350-289832
Sequence    

Annotation

kegg
ID vvi:100261221
description lachrymatory-factor synthase-like
nr
ID XP_002283822.1
description PREDICTED: lachrymatory-factor synthase-like [Vitis vinifera]
swissprot
ID P59082
description Lachrymatory-factor synthase OS=Allium cepa GN=LFS PE=1 SV=1
trembl
ID F6HGL5
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g03250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000358_260 0.0 - - PREDICTED: lachrymatory-factor synthase-like [Vitis vinifera]
2 Hb_010577_020 0.0585173411 - - -
3 Hb_000915_170 0.0648912795 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
4 Hb_005833_010 0.0650373144 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
5 Hb_056506_040 0.0728343563 - - -
6 Hb_000928_030 0.0730131454 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
7 Hb_006816_380 0.074856209 - - PREDICTED: kinesin-4-like [Jatropha curcas]
8 Hb_126714_010 0.0753556732 - - hypothetical protein CISIN_1g041016mg, partial [Citrus sinensis]
9 Hb_006588_140 0.0762685942 - - PREDICTED: uncharacterized protein LOC104906772 [Beta vulgaris subsp. vulgaris]
10 Hb_000103_200 0.082617158 - - calmodulin binding protein, putative [Ricinus communis]
11 Hb_002221_060 0.0830712923 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
12 Hb_001534_130 0.084798815 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
13 Hb_003723_050 0.0867246808 - - conserved hypothetical protein [Ricinus communis]
14 Hb_163566_010 0.0887528621 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Amborella trichopoda]
15 Hb_000111_490 0.089919523 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007904_150 0.0907805138 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]
17 Hb_001981_050 0.0941702989 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
18 Hb_001956_130 0.0946102208 - - catalytic, putative [Ricinus communis]
19 Hb_002740_050 0.0957600765 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
20 Hb_000003_380 0.0971868056 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000358_260 Hb_000358_260 Hb_010577_020 Hb_010577_020 Hb_000358_260--Hb_010577_020 Hb_000915_170 Hb_000915_170 Hb_000358_260--Hb_000915_170 Hb_005833_010 Hb_005833_010 Hb_000358_260--Hb_005833_010 Hb_056506_040 Hb_056506_040 Hb_000358_260--Hb_056506_040 Hb_000928_030 Hb_000928_030 Hb_000358_260--Hb_000928_030 Hb_006816_380 Hb_006816_380 Hb_000358_260--Hb_006816_380 Hb_010577_020--Hb_056506_040 Hb_010577_020--Hb_005833_010 Hb_011549_040 Hb_011549_040 Hb_010577_020--Hb_011549_040 Hb_068804_190 Hb_068804_190 Hb_010577_020--Hb_068804_190 Hb_000111_490 Hb_000111_490 Hb_010577_020--Hb_000111_490 Hb_000915_170--Hb_006816_380 Hb_007904_150 Hb_007904_150 Hb_000915_170--Hb_007904_150 Hb_001981_050 Hb_001981_050 Hb_000915_170--Hb_001981_050 Hb_002740_050 Hb_002740_050 Hb_000915_170--Hb_002740_050 Hb_185811_010 Hb_185811_010 Hb_000915_170--Hb_185811_010 Hb_126714_010 Hb_126714_010 Hb_005833_010--Hb_126714_010 Hb_163566_010 Hb_163566_010 Hb_005833_010--Hb_163566_010 Hb_006588_140 Hb_006588_140 Hb_005833_010--Hb_006588_140 Hb_001426_020 Hb_001426_020 Hb_005833_010--Hb_001426_020 Hb_056506_040--Hb_000111_490 Hb_056506_040--Hb_068804_190 Hb_024723_010 Hb_024723_010 Hb_056506_040--Hb_024723_010 Hb_005532_080 Hb_005532_080 Hb_056506_040--Hb_005532_080 Hb_056506_040--Hb_011549_040 Hb_000028_190 Hb_000028_190 Hb_000928_030--Hb_000028_190 Hb_004137_040 Hb_004137_040 Hb_000928_030--Hb_004137_040 Hb_052530_020 Hb_052530_020 Hb_000928_030--Hb_052530_020 Hb_002221_060 Hb_002221_060 Hb_000928_030--Hb_002221_060 Hb_000103_200 Hb_000103_200 Hb_000928_030--Hb_000103_200 Hb_012395_240 Hb_012395_240 Hb_006816_380--Hb_012395_240 Hb_006816_380--Hb_000928_030 Hb_006816_380--Hb_052530_020 Hb_006816_380--Hb_000103_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0606052 1.40376 81.3557 125.009 0 0.119191
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.142145 0 0 0 96.7141

CAGE analysis