Hb_000359_010

Information

Type -
Description -
Location Contig359: 13821-19005
Sequence    

Annotation

kegg
ID rcu:RCOM_1466650
description o-linked n-acetylglucosamine transferase, ogt, putative
nr
ID XP_002514581.1
description o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
swissprot
ID Q8BGB2
description Tetratricopeptide repeat protein 7A OS=Mus musculus GN=Ttc7a PE=1 SV=1
trembl
ID B9RLG2
description O-linked n-acetylglucosamine transferase, ogt, putative OS=Ricinus communis GN=RCOM_1466650 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tetratricopeptide repeat protein 7b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37009: 13811-19361
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_010 0.0 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
2 Hb_000080_190 0.0907680708 - - -
3 Hb_005625_020 0.0946150614 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 [Jatropha curcas]
4 Hb_000363_160 0.1007285807 - - Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus communis]
5 Hb_002687_110 0.1020936519 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
6 Hb_000260_570 0.1047699373 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_004738_040 0.1064107349 - - PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Populus euphratica]
8 Hb_000138_110 0.1087272733 - - PREDICTED: probable protein phosphatase 2C 68 [Jatropha curcas]
9 Hb_004079_030 0.1108993057 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
10 Hb_181288_020 0.1160455269 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
11 Hb_064441_010 0.116274432 - - PREDICTED: MACPF domain-containing protein CAD1-like isoform X1 [Jatropha curcas]
12 Hb_000047_030 0.1168699496 - - tfiif-alpha, putative [Ricinus communis]
13 Hb_002217_300 0.1169933528 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]
14 Hb_114336_020 0.1171820205 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Fragaria vesca subsp. vesca]
15 Hb_003943_040 0.117555242 - - DNA binding protein, putative [Ricinus communis]
16 Hb_001090_050 0.118044456 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X1 [Jatropha curcas]
17 Hb_001811_030 0.1185297327 - - Beta-ureidopropionase, putative [Ricinus communis]
18 Hb_006816_140 0.118836808 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09820 [Jatropha curcas]
19 Hb_001897_040 0.1192574976 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
20 Hb_000482_090 0.1196231133 - - PREDICTED: uncharacterized protein LOC105638145 [Jatropha curcas]

Gene co-expression network

sample Hb_000359_010 Hb_000359_010 Hb_000080_190 Hb_000080_190 Hb_000359_010--Hb_000080_190 Hb_005625_020 Hb_005625_020 Hb_000359_010--Hb_005625_020 Hb_000363_160 Hb_000363_160 Hb_000359_010--Hb_000363_160 Hb_002687_110 Hb_002687_110 Hb_000359_010--Hb_002687_110 Hb_000260_570 Hb_000260_570 Hb_000359_010--Hb_000260_570 Hb_004738_040 Hb_004738_040 Hb_000359_010--Hb_004738_040 Hb_000080_190--Hb_002687_110 Hb_000080_190--Hb_005625_020 Hb_000898_040 Hb_000898_040 Hb_000080_190--Hb_000898_040 Hb_000080_190--Hb_004738_040 Hb_009048_040 Hb_009048_040 Hb_000080_190--Hb_009048_040 Hb_000409_020 Hb_000409_020 Hb_000080_190--Hb_000409_020 Hb_005625_020--Hb_002687_110 Hb_002769_050 Hb_002769_050 Hb_005625_020--Hb_002769_050 Hb_005625_020--Hb_004738_040 Hb_005625_020--Hb_000898_040 Hb_154648_010 Hb_154648_010 Hb_005625_020--Hb_154648_010 Hb_003943_040 Hb_003943_040 Hb_000363_160--Hb_003943_040 Hb_000363_160--Hb_005625_020 Hb_000363_160--Hb_002687_110 Hb_000029_020 Hb_000029_020 Hb_000363_160--Hb_000029_020 Hb_000898_050 Hb_000898_050 Hb_000363_160--Hb_000898_050 Hb_000431_010 Hb_000431_010 Hb_002687_110--Hb_000431_010 Hb_002687_110--Hb_004738_040 Hb_001277_330 Hb_001277_330 Hb_002687_110--Hb_001277_330 Hb_002687_110--Hb_000409_020 Hb_002687_110--Hb_003943_040 Hb_005162_070 Hb_005162_070 Hb_000260_570--Hb_005162_070 Hb_001493_180 Hb_001493_180 Hb_000260_570--Hb_001493_180 Hb_001090_050 Hb_001090_050 Hb_000260_570--Hb_001090_050 Hb_002027_040 Hb_002027_040 Hb_000260_570--Hb_002027_040 Hb_010608_050 Hb_010608_050 Hb_000260_570--Hb_010608_050 Hb_000617_150 Hb_000617_150 Hb_000260_570--Hb_000617_150 Hb_000510_320 Hb_000510_320 Hb_004738_040--Hb_000510_320 Hb_004738_040--Hb_001277_330 Hb_004738_040--Hb_000409_020 Hb_004738_040--Hb_000431_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.94715 1.60174 1.85868 6.03191 6.86052 8.30207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.46591 9.06239 18.5296 5.26039 5.27138

CAGE analysis