Hb_000359_090

Information

Type -
Description -
Location Contig359: 117556-122868
Sequence    

Annotation

kegg
ID mdm:103405156
description persulfide dioxygenase ETHE1 homolog, mitochondrial-like
nr
ID XP_008342341.1
description PREDICTED: persulfide dioxygenase ETHE1 homolog, mitochondrial-like [Malus domestica]
swissprot
ID Q9C8L4
description Persulfide dioxygenase ETHE1 homolog, mitochondrial OS=Arabidopsis thaliana GN=GLY3 PE=1 SV=3
trembl
ID B9H838
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22640g PE=4 SV=2
Gene Ontology
ID GO:0004416
description persulfide dioxygenase ethe1 mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37040: 117412-122824
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_090 0.0 - - PREDICTED: persulfide dioxygenase ETHE1 homolog, mitochondrial-like [Malus domestica]
2 Hb_000429_050 0.0776418136 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
3 Hb_000258_240 0.0899279999 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
4 Hb_002781_030 0.0913917047 - - protein binding protein, putative [Ricinus communis]
5 Hb_000384_070 0.096286786 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002133_020 0.1070800724 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004032_030 0.1090787557 - - PREDICTED: RNA-binding protein 24-like isoform X1 [Populus euphratica]
8 Hb_013057_020 0.1096124055 - - PREDICTED: E3 ubiquitin-protein ligase RLIM-like [Jatropha curcas]
9 Hb_012651_010 0.111425367 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
10 Hb_000417_100 0.112675183 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
11 Hb_000212_450 0.1135693657 - - PREDICTED: basic leucine zipper and W2 domain-containing protein 2 [Jatropha curcas]
12 Hb_000836_280 0.113699925 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
13 Hb_000215_320 0.1143225825 - - phosphofructokinase [Hevea brasiliensis]
14 Hb_000983_050 0.1145305454 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_000975_350 0.1147584734 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
16 Hb_000060_050 0.1189198972 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
17 Hb_000140_380 0.1195972551 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
18 Hb_000477_100 0.1197520335 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
19 Hb_033594_080 0.1220507121 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
20 Hb_001141_420 0.1223086239 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000359_090 Hb_000359_090 Hb_000429_050 Hb_000429_050 Hb_000359_090--Hb_000429_050 Hb_000258_240 Hb_000258_240 Hb_000359_090--Hb_000258_240 Hb_002781_030 Hb_002781_030 Hb_000359_090--Hb_002781_030 Hb_000384_070 Hb_000384_070 Hb_000359_090--Hb_000384_070 Hb_002133_020 Hb_002133_020 Hb_000359_090--Hb_002133_020 Hb_004032_030 Hb_004032_030 Hb_000359_090--Hb_004032_030 Hb_012651_010 Hb_012651_010 Hb_000429_050--Hb_012651_010 Hb_000028_600 Hb_000028_600 Hb_000429_050--Hb_000028_600 Hb_000429_050--Hb_002781_030 Hb_001014_210 Hb_001014_210 Hb_000429_050--Hb_001014_210 Hb_000429_050--Hb_000258_240 Hb_000258_240--Hb_002781_030 Hb_003529_030 Hb_003529_030 Hb_000258_240--Hb_003529_030 Hb_003988_050 Hb_003988_050 Hb_000258_240--Hb_003988_050 Hb_062537_010 Hb_062537_010 Hb_000258_240--Hb_062537_010 Hb_000928_190 Hb_000928_190 Hb_000258_240--Hb_000928_190 Hb_000025_190 Hb_000025_190 Hb_000258_240--Hb_000025_190 Hb_002781_030--Hb_000928_190 Hb_148130_020 Hb_148130_020 Hb_002781_030--Hb_148130_020 Hb_013057_020 Hb_013057_020 Hb_002781_030--Hb_013057_020 Hb_001481_150 Hb_001481_150 Hb_002781_030--Hb_001481_150 Hb_002995_050 Hb_002995_050 Hb_000384_070--Hb_002995_050 Hb_002042_150 Hb_002042_150 Hb_000384_070--Hb_002042_150 Hb_001489_110 Hb_001489_110 Hb_000384_070--Hb_001489_110 Hb_002045_070 Hb_002045_070 Hb_000384_070--Hb_002045_070 Hb_004607_090 Hb_004607_090 Hb_000384_070--Hb_004607_090 Hb_000384_070--Hb_002133_020 Hb_001747_030 Hb_001747_030 Hb_002133_020--Hb_001747_030 Hb_002133_020--Hb_000258_240 Hb_019181_030 Hb_019181_030 Hb_002133_020--Hb_019181_030 Hb_002133_020--Hb_002781_030 Hb_002298_030 Hb_002298_030 Hb_004032_030--Hb_002298_030 Hb_005054_080 Hb_005054_080 Hb_004032_030--Hb_005054_080 Hb_005695_120 Hb_005695_120 Hb_004032_030--Hb_005695_120 Hb_000417_100 Hb_000417_100 Hb_004032_030--Hb_000417_100 Hb_000392_340 Hb_000392_340 Hb_004032_030--Hb_000392_340 Hb_003929_270 Hb_003929_270 Hb_004032_030--Hb_003929_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6715 18.4994 12.5895 53.7361 9.99306 15.7274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.1351 19.3628 20.0698 19.2632 14.6703

CAGE analysis